Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00436 ATGGGAGGTGAAGGCGCTGTGGAGGACTCCAAGGCCAACACCACCGAGGGAGGAGGCGGTGGAGGAGGAGTCAACATCAACATTCGGTGCTCGAACGGTTCAAAGTTCTCCGTTTCAATTGGTCTAGATTCCACCGTCGTCTCCTTCAAGGAGGTTGTGGCTCGCAGTTGTGACATACCTGCTAACCAACAGCGCCTGATTTACAAAGGTCGCATCCTCAAGGATGATCAAACTCTCCAGAGCTACGGTTTGGAGGCAGACCACACTGTCCATTTGGTTCGTGGCTTTGCGCCTTCAGGTGCTGGTAGTGGGACCAATAGTACTGGTGCTAACAGCACAGCTAATACGAGAGGTGCCGGTGCTACTGAGGGTGGGGGCTTAGGTGCTTCACCATTCCCTGGGTTAGGACTCAATGGGATGGGGGGCAATGGCCTTGGTGGCTTATTTGGAGCGGGCTTTCCTGATCTTGAACAGATGCAGCAACCATTCTTGTCAAATCCCAATATTGTGAGGGAAATAATGAACACACCTGCCATGCAGAATTTAATAAATAATCCCGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATCCTTAATGATCCCAGCACACTTCGCCAAACACTTGAAGCTACAAGGAATCCTGAGATCATGCGCGAAATGATGAGGAATACGGACAGAGCAATGAGCAACATTGAATCCTCTCCTGAGGGATTCAACATGCTGAGGCGTATGTACGAAAATGTTCAAGAGCCCTTTCTAAATGCCACTACAATGACTGGTAATACAGGAAATGAACAAGTTAGGAACCAAGCGACAAATCCCTCAACTACTAGTTCTGATGCAACTTCCCCCGTGCCCAATACTAACCCACTTCCCAATCCTTGGTCATCTGCTGGGACTGGAGGTGCCCAAAATACCACTAGAAGATCAACTACTGGTGCGGATGCTCGGCAGCAGACACCACCCACTGGCTTAGGAGGGGCTGGTCTGCCCGATCTTGATGGTATGTTGGGTGGCATGCCAGATTCTGCTTTACTCACACAGTTAATGCAAAATCCAGCTATTTCACAGATGATGCAAAGTATCCTCTCCAATCCGCAGACTATGAATCAGATTCTTGGAGTCAATGCTGAGCAGCGTGGCATGCCTGATTTAAATTCTCTCAGAGAAGTGATGCAAAACCCAGAATTTCTTCGTCTATTTTCCTCACCAGAGACCCTGCAGCAACTTATGTCTTTCCAGCAAGCTCTCTTGTCCCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCCCTGGATCGATGAACAACTTGAGTTTGGAAATGCTATCGAGCATGTTTGGCGGACTTGGAGCTGGCAGCCTAGCTGTTCCAAACAGATCAAATGAACCACCTGAGCAGCTGTATGCTACCCAACTTTCGCAGCTGCAAGAGATGGGATTCTTCGACACGCAAGAAAACATAAGGGCTCTTATTGCCACGTCGGGGAATGTTCATGCAGCTGTTGAGCGCCTTTTGGGGAACTCTGGACAGTAG 1596 0.4906 MGGEGAVEDSKANTTEGGGGGGGVNINIRCSNGSKFSVSIGLDSTVVSFKEVVARSCDIPANQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSGAGSGTNSTGANSTANTRGAGATEGGGLGASPFPGLGLNGMGGNGLGGLFGAGFPDLEQMQQPFLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMTGNTGNEQVRNQATNPSTTSSDATSPVPNTNPLPNPWSSAGTGGAQNTTRRSTTGADARQQTPPTGLGGAGLPDLDGMLGGMPDSALLTQLMQNPAISQMMQSILSNPQTMNQILGVNAEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLMSFQQALLSQLGQQQSTQEPGQTGGGPGSMNNLSLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00436 531 SUPERFAMILY UBA-like 485 527 IPR009060 GO:0005515
Arst5g00436 531 Gene3D - 22 107 - -
Arst5g00436 531 Pfam Ubiquitin family 26 93 IPR000626 GO:0005515
Arst5g00436 531 PANTHER UBIQUILIN 24 526 IPR015496 -
Arst5g00436 531 MobiDBLite consensus disorder prediction 436 458 - -
Arst5g00436 531 CDD UBA_PLICs 489 527 - -
Arst5g00436 531 Gene3D - 471 531 - -
Arst5g00436 531 SMART uba_6 489 527 IPR015940 -
Arst5g00436 531 FunFam Ubiquitin domain-containing protein DSK2b 21 107 - -
Arst5g00436 531 MobiDBLite consensus disorder prediction 1 24 - -
Arst5g00436 531 FunFam Ubiquitin domain-containing protein DSK2b 472 530 - -
Arst5g00436 531 SMART CBM 345 387 IPR006636 -
Arst5g00436 531 SMART CBM 390 425 IPR006636 -
Arst5g00436 531 SMART CBM 142 183 IPR006636 -
Arst5g00436 531 SMART CBM 196 235 IPR006636 -
Arst5g00436 531 MobiDBLite consensus disorder prediction 270 334 - -
Arst5g00436 531 CDD Ubl_Dsk2p_like 24 96 - -
Arst5g00436 531 ProSiteProfiles Ubiquitin domain profile. 24 93 IPR000626 GO:0005515
Arst5g00436 531 MobiDBLite consensus disorder prediction 270 344 - -
Arst5g00436 531 SUPERFAMILY Ubiquitin-like 16 112 IPR029071 -
Arst5g00436 531 Pfam UBA/TS-N domain 489 525 IPR015940 -
Arst5g00436 531 Gene3D - 191 249 - -
Arst5g00436 531 MobiDBLite consensus disorder prediction 100 127 - -
Arst5g00436 531 SMART ubq_7 24 95 IPR000626 GO:0005515
Arst5g00436 531 FunFam Ubiquitin domain-containing protein DSK2b 193 249 - -
Arst5g00436 531 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 483 528 IPR015940 -
Arst5g00436 531 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00436 Arst-Chr5 3690017 3694416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00436 24 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 2.68e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00436 K04523 - gmx:100797539 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00436 5 3690017 3694416 Arst5g00436 5 3690017 3694416 ECH
Arst5g00436 5 3690017 3694416 Arst1g01143 1 11281205 11285603 PCT