Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00422 ATGCCGAAGGCAAGGACTAACGTCAAAGCTGCTGACAACAGGTTGAGCCGCAAGGACAGTGGAATCGGAACGAAGAAGGCGAAGAAGAAAGCTGCTCCGAAGGATCCGAACAAGCCTAAGAGGCCTCCTTCTGCTTTCTTCGTTTTCATGTCTGACTTCAGAGAGGAGTATAAGAAGGAGAATCCGAACAACAAATCCGTTGCTCTTGTTGGAAAAGCTGGTGGCGCAAAGTGGAAATCCATGTCCGATGCTGAAAAAGCTCCATACCAAGCAAAAGCTGAGAAGAACAAACTAGCGTATGATGAGGATATCAGGGCCTACAACAAAGGACTGAATGAGGGTGGAGATTCTGACAAGTCGAAATCTGAGGTGAATGACGATGATGATGAGGAGGAGGATGAGTGA 405 0.4741 MPKARTNVKAADNRLSRKDSGIGTKKAKKKAAPKDPNKPKRPPSAFFVFMSDFREEYKKENPNNKSVALVGKAGGAKWKSMSDAEKAPYQAKAEKNKLAYDEDIRAYNKGLNEGGDSDKSKSEVNDDDDEEEDE 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00422 134 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 39 108 IPR009071 -
Arst5g00422 134 MobiDBLite consensus disorder prediction 88 122 - -
Arst5g00422 134 CDD HMG-box_AtHMGB1-like 40 100 - -
Arst5g00422 134 SMART hmgende2 38 109 IPR009071 -
Arst5g00422 134 MobiDBLite consensus disorder prediction 10 30 - -
Arst5g00422 134 Gene3D High mobility group box domain 23 123 IPR036910 -
Arst5g00422 134 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 6 133 IPR031061 -
Arst5g00422 134 MobiDBLite consensus disorder prediction 79 134 - -
Arst5g00422 134 MobiDBLite consensus disorder prediction 1 44 - -
Arst5g00422 134 Pfam HMG (high mobility group) box 39 108 IPR009071 -
Arst5g00422 134 SUPERFAMILY HMG-box 30 113 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00422 Arst-Chr5 3573314 3574982 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Arst5g00422 HMG_box 6.9e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00422 K25507 - aip:107641626 219.55