Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00398 ATGCTTAAAGTTTGGTTCTTGGTGTTCATTGTTCTCTCCAATGGGTTCTCATCAACTGGGCAAGACATGCACAATTCCACAGTACCTGATGTTGTAAATATTGGGGCTCTCTTCAATTACAATACCACTTTTGGTAGAACTGTAAAAATTGCGATAAGAGCAGCACTCGAAGAACTGAATGCTAATCCATCTATTCTTGGTAAAACACACTTGAATGTCATACTACAAGAAGATTCTAAATACAGAGGTTTTCTGAGCATTTCTGAGGTTTTGCAGGTTGCAACAAAGCATACTGTGGCAATAATTGGTCCCCAGTCTGCTGTAACAGCTCATGTCATATCTCATATTGCTAATGAGCTCCAAGTTCCGCTGCTATCATTTTCGGCTTTAGATCCCACCCTTTCTTCACTTCAGTTCCCATTCTTTATTAGAACTAGTCATAGTGACCTTTATGTGATGACTGCAATAGCAGACTTTGTTGACTACTATGGGTGGAAAGACGTTATTGCTTTCTACGTCGATGATGATAGTGGGAGGAATGGTATTGAAGCTTTAGGTGATAAGCTTGCGGAGAAACGTTGCAGGATCTCATATAAGGCACCTATGAGCCCTGAACCGACCGATGAAGAAATTACAAACGTGCTTGTTCAGGTGGCTTTGGCAGAATCACGGGTTATAGTTGTTCACGTCAACATTTTCTTGGGCCGCAAGGTTTTCGATATTGCAAAGAGTCTTGGGATGATGGGAAGTGGGTATGTCTGGCTAGCCACTACTTTCCTTTCTGGTATACTTGAAATGAATACTCCCTTCCCTGCAGGATTTACAAATAATATTCAAGGTGTTATTACATTTCGTGTATATACACCAGATTCTGAACTCAAAAGAAGGTTTGCTTCTAAATGGAAAAATTTGACTCAAGGGGAGACTGCTAATGACCCCCTTGGATTAAGTGCTTTAGGTCTCTATGCATATGATACTGTTTATGCACTTGCTCATGCACTAGATGCATTTTTCAAACAAGGGAACCGAATTACTTTCTCAAAGGATCCAAAATTATCATTACTTCATGGAGACAACTTGGGTCTTGATACATTGAACATCTTCAATGAAGGAAATCTTTTGCGCAGAAGCATATATGAAGTTAACATGACCGGTGTGACTGGTACATTCAGGTATACATCTGACAGAGACCTTGTAAATCCTTCATATGAAATCATGAATGTGGTTGGAACAGGGTTTAGGAGTATTGGTTATTGGTCCAATTACTCTGGATTATCAGTTGATCCTCCAGAAGCTCTTTCTTCCAAACCAGCCAATAATTCCAGGGCTGGTAAAATGTTACGTCCGGTGATTTGGCCTGGAGATACTACCAAAAAACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGTTATTGAAAATTGGAGTTCCAAAAAGCATTAGTTACCATGAATTTGTCTCACAAGTACCAGGCACCGATACATTTGAGGGATTCTGCATTGAGGTATTTCTTGCTGCAGTGAATTTGTTACCTTATGCTGTCCCCTATAAATTTATCCCGTTTGGCGATGACCACAGCAATCCTAGCGCCACTGAACTTGTTCGTCTAATCACAACGGGTGAATTTGATGGTGCTGTTGGTGATATTACAATTACCACAGAAAGAACAAAGATGGTGGATTTTACACAACCTTATATTGAGTCTGGTCTAGTGGTGGTAGCACCAGTTAAGAAGACAGATTCGAATGCCTGGGCATTTTTGGCCCCATTTACGCCAATGATGTGGGCAGTCACAGCTATCTTTTTTCTATTTGTGGGAGCTGTTGTTTGGATATTGGAGCATAGAGTGAATGATGATTTTAGGGGCCCTCCCAAGCAACAAATAGTAACTACTTTATGGTTTAGTTTTTCAACCATGTTCTTTTCACAAAAGGAAAATACAGTGAGCACGCTTGGTCGCTTTGTGCTGATTATATGGCTATTTGTAGTTCTTATAGTTAACTCGAGTTACACAGCAAGTCTGACCTCAATTCTCACTGTGCAACAACTTTCTTCACCAATCAAAGGAATTGAAAGTTTAGTGAATGGAAAGGATCCTATTGGCTACACACAAGGTTCTTTTGCAAAAAATTATTTAATTGAGGAAATTGGCATTAACGAATCCAGGCTTGTTGCTCTGAACACACCGGAGGAAGCTGCGAATGCACTAAAAAAGGGTCCCCATGATGGGGGTATCTGTGCATATATTGATGAGCGTGCCTATATGGAGCTCTTCCTTTCAACCCGGTGCGATTTCACTGTTATAGGTCAAGAGTTCACCAGAGATGGTTGGGGATTTGCCTTTCCACGAGACTCTCCGTTAGCAATAGACCTGTCAACAGCAATTCTTGAAATGGCAGAGAGTGGAGACCTACAAAGGATCCACGACAAATGGCTTCTGCGCAGCGCTTGCTTATCACAAGGCACAAAGCTCGAAGTGGAAAGACTAAACCTTAAAAGCTTCTGGGGCCTCTATCTGATCTGCGGCTTTGCCTGCTTCCTTGCTCTCTTCATATATCTCATACAGATAGTTAGGCAGTACATCAAGCACTCCTCAGAGGAAGTTCACCCTGCTGATCAGAGCACGTCGTCATCAGGGTCCTCGCGCCTTCGAAGTTTCCTTTCATTTGTAGACGAAAAGGAAGAGAAGGTTAAGCACCGTTCCAAGAGAAGGCAAACAGAGATGACCTCATGCCGAAGCAGCATAGTTGGATCATCCATTAGCTTTAGCTCCAACAAAGACTACGCTCATTCATCTCCACACAAAAGTGATGGTGGTGGTGAAGCATAA 2829 0.4178 MLKVWFLVFIVLSNGFSSTGQDMHNSTVPDVVNIGALFNYNTTFGRTVKIAIRAALEELNANPSILGKTHLNVILQEDSKYRGFLSISEVLQVATKHTVAIIGPQSAVTAHVISHIANELQVPLLSFSALDPTLSSLQFPFFIRTSHSDLYVMTAIADFVDYYGWKDVIAFYVDDDSGRNGIEALGDKLAEKRCRISYKAPMSPEPTDEEITNVLVQVALAESRVIVVHVNIFLGRKVFDIAKSLGMMGSGYVWLATTFLSGILEMNTPFPAGFTNNIQGVITFRVYTPDSELKRRFASKWKNLTQGETANDPLGLSALGLYAYDTVYALAHALDAFFKQGNRITFSKDPKLSLLHGDNLGLDTLNIFNEGNLLRRSIYEVNMTGVTGTFRYTSDRDLVNPSYEIMNVVGTGFRSIGYWSNYSGLSVDPPEALSSKPANNSRAGKMLRPVIWPGDTTKKPRGWVFPNNGRLLKIGVPKSISYHEFVSQVPGTDTFEGFCIEVFLAAVNLLPYAVPYKFIPFGDDHSNPSATELVRLITTGEFDGAVGDITITTERTKMVDFTQPYIESGLVVVAPVKKTDSNAWAFLAPFTPMMWAVTAIFFLFVGAVVWILEHRVNDDFRGPPKQQIVTTLWFSFSTMFFSQKENTVSTLGRFVLIIWLFVVLIVNSSYTASLTSILTVQQLSSPIKGIESLVNGKDPIGYTQGSFAKNYLIEEIGINESRLVALNTPEEAANALKKGPHDGGICAYIDERAYMELFLSTRCDFTVIGQEFTRDGWGFAFPRDSPLAIDLSTAILEMAESGDLQRIHDKWLLRSACLSQGTKLEVERLNLKSFWGLYLICGFACFLALFIYLIQIVRQYIKHSSEEVHPADQSTSSSGSSRLRSFLSFVDEKEEKVKHRSKRRQTEMTSCRSSIVGSSISFSSNKDYAHSSPHKSDGGGEA 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00398 942 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Arst5g00398 942 PRINTS Metabotropic glutamate GPCR signature 168 185 IPR000337 GO:0004930|GO:0007186|GO:0016020
Arst5g00398 942 PRINTS Metabotropic glutamate GPCR signature 101 127 IPR000337 GO:0004930|GO:0007186|GO:0016020
Arst5g00398 942 PRINTS Metabotropic glutamate GPCR signature 133 152 IPR000337 GO:0004930|GO:0007186|GO:0016020
Arst5g00398 942 PRINTS Metabotropic glutamate GPCR signature 152 168 IPR000337 GO:0004930|GO:0007186|GO:0016020
Arst5g00398 942 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Arst5g00398 942 Gene3D - 782 812 - -
Arst5g00398 942 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 877 IPR015683 -
Arst5g00398 942 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Arst5g00398 942 Gene3D - 583 707 - -
Arst5g00398 942 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Arst5g00398 942 Pfam Bacterial extracellular solute-binding proteins, family 3 492 812 IPR001638 -
Arst5g00398 942 MobiDBLite consensus disorder prediction 893 907 - -
Arst5g00398 942 Gene3D - 728 781 - -
Arst5g00398 942 FunFam Glutamate receptor 709 816 - -
Arst5g00398 942 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Arst5g00398 942 Gene3D - 148 425 - -
Arst5g00398 942 Gene3D - 50 400 - -
Arst5g00398 942 FunFam Glutamate receptor 583 713 - -
Arst5g00398 942 PIRSF IGluLR_plant 1 935 IPR017103 -
Arst5g00398 942 PIRSF IGluLR_plant 1 935 IPR017103 -
Arst5g00398 942 CDD GluR_Plant 472 812 - -
Arst5g00398 942 Gene3D - 468 582 - -
Arst5g00398 942 MobiDBLite consensus disorder prediction 893 942 - -
Arst5g00398 942 MobiDBLite consensus disorder prediction 908 929 - -
Arst5g00398 942 FunFam Glutamate receptor 148 305 - -
Arst5g00398 942 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Arst5g00398 942 FunFam Glutamate receptor 467 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00398 Arst-Chr5 3440056 3445117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00398 5 914 Ion Channels AT3G51480 57.300 0.0 1103