Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00393 ATGACACGTGCTCTTAGATCCCTCACATCCACCGCCGACAACGCCACCGTCGTTGCCGCCGCTCCGCCTCCCGAGGCTGTGGCTCTTGAATCCGACTTCGTCGTCATCCTCGCAGCTCTCCTCTGCGCCCTCATATGCGTCGTCGGTCTTGTCGCCGTCGCCAGGTGCGCCTGGCTCCGCCGAGGCTCCGCCGCCGGAGCCTCACCGCGTCAGGCTCTCGCCAACAAAGGATTGAAGAAGAAGGTTCTCCAGTCGTTACCAAAATTCGCCTACGTTGACGGAGGAGATCCAGAATCCGGATTCGGTAGCGGTGCCGGGTGGATGGTGACGGCGGAGTGCGCGATCTGCCTTTCGGATTTTGCCGCCGGCGATGAGATCCGCGTGTTGCCGCAGTGTGGCCACGGGTTCCACGTGGCCTGCATAGACACGTGGCTTGGATCACACTCTTCTTGCCCTTCGTGCCGACAGGTTTTAGCGGTTGCGAGGTGCCAGAAGTGCGGGAGGTTTCCCGCCACCGGAGCTGGAAGCTCCGCCGCAAGAGCATCGATCAATGAACCTGAGCTGAAGTCGAGAGAAGACGACAATGCCGTTTTTAACAATAACACTAATAACAGTAACAGTAATAGCGGCGGTTTCAGTTGTAATAGCAACAATAGTAGTAGCAACACCAGCAATAATAGTGGTTTCTTGCCTTGA 696 0.5747 MTRALRSLTSTADNATVVAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGSAAGASPRQALANKGLKKKVLQSLPKFAYVDGGDPESGFGSGAGWMVTAECAICLSDFAAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQVLAVARCQKCGRFPATGAGSSAARASINEPELKSREDDNAVFNNNTNNSNSNSGGFSCNSNNSSSNTSNNSGFLP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00393 231 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Arst5g00393 231 CDD RING-H2_EL5-like 112 155 - -
Arst5g00393 231 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 21 167 - -
Arst5g00393 231 SUPERFAMILY RING/U-box 86 160 - -
Arst5g00393 231 MobiDBLite consensus disorder prediction 195 231 - -
Arst5g00393 231 MobiDBLite consensus disorder prediction 172 231 - -
Arst5g00393 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 160 IPR013083 -
Arst5g00393 231 SMART FANCL_C_2 109 163 - -
Arst5g00393 231 Pfam Ring finger domain 112 155 IPR001841 -
Arst5g00393 231 SMART ring_2 113 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00393 Arst-Chr5 3392222 3393383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00393 28 198 C3H Transcription Factor Family AT1G20823 58.011 3.67e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00393 - - adu:107487390 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00393 5 3392222 3393383 Arst5g00393 5 3392222 3393383 ECH
Arst5g00393 5 3392222 3393383 Arst3g04039 3 113796674 113797805 ECH
Arst5g00393 5 3392222 3393383 Arst1g01181 1 11612120 11613240 PCT