Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00379 ATGAGTGATGCGAAAGAAAATGAGGAAGTTGGCCAGGGTGTGCCCTCGGCTATGGAAGAAAACCAACACTTAGATGATGCCAATTTTCAAATTCAACCTGATGCTTCTTCTACTCCTGCTCCAGTAGAGGAAAGTCCAAATCACGTCAAAAACATATCGAAGGAGCCGCCTGTTGAGTCTAAGGCGGAGGCATCTGCTGAGTCTAAGACAGAGCCACCTGCTGAGTCTACGGCTGAGCCACCTGCTGAGGTTATGGCAGAGCTGCATCCTGTGGCAAAGGCAGAACCACCTCCAGAGGCCAAGGCAGAGCCATCTCCTGAGGTCAAGGCTGAGCAACCTCTTAGAGCTGTGTCAGAGCCATCTGCTGAGGCTAAGTCAAAGTTACCTGCCCAGGCTACGGCAGTACCACCTGCGGAAGCTGAGGCAGATCCTCCTTCTGAGGATAAGTCTGAGCAAGCTTCTGAGACTAAATCTGTGCTACCTGCTGAAGCTATGTCAGCACCAGATTCTGCGGACAAGGCTGAGCCACCACTTGAGGACAAAAGTGAGGATCAAGAGGTGGTTCCTGAGGGTATTCAACAGCAAGATATTCAAAGTAGTGAAAATACTCTTCAGTCAGTCACAGTAGAGCTTGATGTAAATAGAACTGATCGTGAGGAAGCTGAAGTTGAGAATAAGACTGATGAAAATCAAGCTGCTGCAACTGCAGACAATGGGAATGAAAACTCAAGTCACATGCTTTTCTTGGACGCAGACCATTGTTATGATGGGAATGAGTCAGGGACGGAGGAAGAGCAATCAGCATTCATGAAGGAGCTTGAAAATTTCTTTAAGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTTTATGGAGAAGGACTTAATTGCCTTAAGTTGTGGAGAGCTGTAACAAGATTGGGTGGTTATGACAAGGTAACCTCGTGTAAGCTATGGCGGCAAGTGGGAGAATCTTTCAAACCTCCTAAGACATGTACCACAGTTTCATGGACTTTCCGTGGGTTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAGATAAAAGGTGGTGAGCTGAGTGTTCCAATTCCTTCACAACCAGAGCCTATGAATATCGAAAATCAGACTTCAGCATCAGGTAGAGCGCGTAGAGATGCTGCAGCACGCGCTATGCGGGGTTGGCACTCACAACGTCTACTAGGCAATGGTGAAGTCGGTGACCCCATTATTAAGGATAGGAATTCTGTGTCTATGCAAAAACGTGAAAAGGAGCAGCTTAAAAGCATCAATTTACTTAAACGTAAGAAACCATCGTATATGGACAATGCAGTCAAAGCTGCACGTAGTAAACCGTCTAAACCACAATTGGATACAGCTGTGATTGATATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAGGATTGCTTTGAGGTATATGCTTTAGTTCCTGGTCTACTTCGAGAAGAGGTGCGTGTTCAATCAGACCCAGCAGGACGCTTAGTTATTAGTGGTGAGCCTGAGCATCTCAATAATCCTTGGGGTGTAACACCTTTCAAAAAGGTTGTAAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCGGTGGTAACTCTGCATGGACAGTTGTTTGTTCGGGTCCCATTTGAGCAATCAGAATAG 1677 0.4574 MSDAKENEEVGQGVPSAMEENQHLDDANFQIQPDASSTPAPVEESPNHVKNISKEPPVESKAEASAESKTEPPAESTAEPPAEVMAELHPVAKAEPPPEAKAEPSPEVKAEQPLRAVSEPSAEAKSKLPAQATAVPPAEAEADPPSEDKSEQASETKSVLPAEAMSAPDSADKAEPPLEDKSEDQEVVPEGIQQQDIQSSENTLQSVTVELDVNRTDREEASDPMEEANEIPQSNNGTEDAVNVCTNNANVAETTAEVKPEDGEVANGKSCNHVEPIPSGHDEPSMLQAVPADTNVEIKNILEVENKTDENQAAATADNGNENSSHMLFLDADHCYDGNESGTEEEQSAFMKELENFFKERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELSVPIPSQPEPMNIENQTSASGRARRDAAARAMRGWHSQRLLGNGEVGDPIIKDRNSVSMQKREKEQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVIDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHLNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00379 639 SUPERFAMILY HSP20-like chaperones 548 635 IPR008978 -
Arst5g00379 639 SMART ARID_2 341 431 - -
Arst5g00379 639 MobiDBLite consensus disorder prediction 1 241 - -
Arst5g00379 639 ProSiteProfiles ARID domain profile. 344 435 IPR001606 GO:0003677
Arst5g00379 639 SUPERFAMILY ARID-like 339 442 IPR036431 GO:0003677
Arst5g00379 639 MobiDBLite consensus disorder prediction 173 187 - -
Arst5g00379 639 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 539 639 IPR002068 -
Arst5g00379 639 MobiDBLite consensus disorder prediction 94 108 - -
Arst5g00379 639 MobiDBLite consensus disorder prediction 48 68 - -
Arst5g00379 639 FunFam AT-rich interactive domain-containing protein 3 531 639 - -
Arst5g00379 639 MobiDBLite consensus disorder prediction 188 211 - -
Arst5g00379 639 FunFam AT-rich interactive domain-containing protein 3 344 443 - -
Arst5g00379 639 MobiDBLite consensus disorder prediction 23 44 - -
Arst5g00379 639 CDD ACD_sHsps_p23-like 558 634 - -
Arst5g00379 639 MobiDBLite consensus disorder prediction 441 460 - -
Arst5g00379 639 Pfam Hsp20/alpha crystallin family 556 638 IPR002068 -
Arst5g00379 639 Pfam ARID/BRIGHT DNA binding domain 347 431 IPR001606 GO:0003677
Arst5g00379 639 SMART bright_3 345 436 IPR001606 GO:0003677
Arst5g00379 639 Gene3D - 538 639 IPR008978 -
Arst5g00379 639 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 175 638 IPR045147 GO:0006357
Arst5g00379 639 CDD ARID 346 431 - -
Arst5g00379 639 Gene3D - 344 441 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00379 Arst-Chr5 3234806 3241060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00379 339 637 ARID Transcription Factor Family AT1G76510 64.474 1.74e-129 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Arst5g00379 HSP20 4.2e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00379 - - gmx:100791081 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00379 5 3234806 3241060 Arst5g00379 5 3234806 3241060 ECH