Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00309 ATGGGGTCTAGTGGCAGCAAAGCCAATTCTTCTGCTTGCAGTTCATCGTCTTCTTCTTCGGGTAGTTTCAGGAAAGGTCGATCTAAGAGGCATAGAGGCTTCCCATCTTATTGTTTGGGAACAACTTCTGGATCTCATGACAGTGATCATGAAGACCAGGTTTGTGATCAGAACAAAGTAAATGGAAGTGGAGTTGAAATAGTTTCGGATGAAGCGAAATCAAAATCCTTTAGAAAAGCCAAGTATGATGATGAAATGCCTCCTAACATCGACCTTGGCGAGTGGGATCACACGGCATCCAGAACCGGTAGCAGCTCTAATCATGTTTCTTCAACTCAGTCTTTGAATCCTTCAAGTAGATTCCTTTCTCGCTTTAGCTTCATTCCTGGTAACATAAGCTTCAGACTTAGCAGAACCACCAGTCTTGGTTCATCAAGGCCTTGTCCTGTTTCTTCTGGAAGTCTCACCATATTTAACAGTGAAGATGAACTTAATCCTCATCCAAGCCACCCTGGAAGCTTGATTAATAGAAATGAAACTCAACAACGTAGAGAATTGCTTAATGCATCTTTTGATGATCGAGTGCCTATTCAGTATCATGGAGGTGCTTCTACTGATTTTAGATCTAATGCACCAGCATTGGATTCCTTTGGCAACTTAGCAAGAAGTCCCACAATTTCTCCTGTCGCGGATGTGATTAGAGATGGGGATGGTACAAGAGAAGTGGTGGATATGAACTTGTTTTCTCCAAGAATTCATACAGAGGCAGAAAATGTTGAGACAAGACATACTGATAGACGAAATGGGGCTCGAGAACCTGTCGATCGAAATGTACGCTTCAGCCGAACTTTAAGTGTTGGAAGACTTAGAGATAGAGTACTCCGACGATCAACATTATCTGAGTTCACGTTTGGCCCTCTGCAACAGGAGAGGGAAGCAAGAGATGCTAGTTGGGACAGAGGAAGAGAAGTGGGGGAGAGAGATACGAGAGTGCCACGGACTAGTCAAAATGCTGTGAATTCTCCAACTACAATTTCTAGCTCCTCATTTAGTGTTCATGACTTTGATGTTGAGACTTCACGATCTAGAGAAACAAGGTATCAAGATCTGCTGGAACACAGGTCTAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGAAGCCGGTTTGAAAATCTGTCTGGACATGACAGATCATGCGTCTTGTCTGGTCAGCACAGAAATGGTCGTTGTACATGCCGAAACGGTAGCCGTGATACGAACTCAACTGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTGATGCTAGCTGAAGCCTTATTTGAGCAATCGGTTGTTCTATCTTCCCGCCCATCTGTGTCTTCTATTGGATCTGTTCCTGCACCTAATGAAGTCGTGGAATCTTTGCCTGTGAAATTATACACAAAGTGCCACAAACATCAAGAAGATGCTGTGCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTACTTCCTTGTCACCATGAATTCCATGAAACTTGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCACTATGTAGAGGGGACATTTGTGTATCAGATACACTGCCAATGGAGAACTAA 1659 0.4358 MGSSGSKANSSACSSSSSSSGSFRKGRSKRHRGFPSYCLGTTSGSHDSDHEDQVCDQNKVNGSGVEIVSDEAKSKSFRKAKYDDEMPPNIDLGEWDHTASRTGSSSNHVSSTQSLNPSSRFLSRFSFIPGNISFRLSRTTSLGSSRPCPVSSGSLTIFNSEDELNPHPSHPGSLINRNETQQRRELLNASFDDRVPIQYHGGASTDFRSNAPALDSFGNLARSPTISPVADVIRDGDGTREVVDMNLFSPRIHTEAENVETRHTDRRNGAREPVDRNVRFSRTLSVGRLRDRVLRRSTLSEFTFGPLQQEREARDASWDRGREVGERDTRVPRTSQNAVNSPTTISSSSFSVHDFDVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCVLSGQHRNGRCTCRNGSRDTNSTDDTNARASISRIVMLAEALFEQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKCHKHQEDAVQCYICLVEYEDGDSMRVLPCHHEFHETCIDKWLKEIHRVCPLCRGDICVSDTLPMEN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00309 552 FunFam Putative RING zinc finger domain superfamily protein 466 544 - -
Arst5g00309 552 SUPERFAMILY RING/U-box 476 545 - -
Arst5g00309 552 MobiDBLite consensus disorder prediction 84 116 - -
Arst5g00309 552 Pfam Ring finger domain 496 539 IPR001841 -
Arst5g00309 552 MobiDBLite consensus disorder prediction 331 349 - -
Arst5g00309 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 544 IPR013083 -
Arst5g00309 552 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 551 - -
Arst5g00309 552 MobiDBLite consensus disorder prediction 98 116 - -
Arst5g00309 552 MobiDBLite consensus disorder prediction 310 349 - -
Arst5g00309 552 MobiDBLite consensus disorder prediction 312 330 - -
Arst5g00309 552 ProSiteProfiles Zinc finger RING-type profile. 497 539 IPR001841 -
Arst5g00309 552 SMART ring_2 497 538 IPR001841 -
Arst5g00309 552 MobiDBLite consensus disorder prediction 1 23 - -
Arst5g00309 552 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00309 Arst-Chr5 2555564 2559965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00309 223 546 C3H Transcription Factor Family AT5G45290 60.177 7.79e-113 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00309 - - gmx:100786091 787.719