Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00308 ATGGGGTCTAGTGGCAGCAAAGCCAATTCTTCTGCTTGCAGTTCATCGTCTTCTTCTTCGGGTAGTTTCAGGAAAGGTCGATCTAAGAGGCATAGAGGCTTCCCATCTTATTGTTTGGGAACAACTTCTGGATCTCATGACAGTGATCATGAAGACCAGGTTTGTGATCAGAACAAAGTAAATGGAAGTGGAGTTGAAATAGTTTCGGATGAAGCGAAATCAAAATCCTTTAGAAAAGCCAAGTATGATGATGAAATGCCTCCTAACATCGACCTTGGCGAGTGGGATCACACGGCATCCAGAACCGGTAGCAGCTCTAATCATGTTTCTTCAACTCAGTCTTTGAATCCTTCAAGTAGATTCCTTTCTCGCTTTAGCTTCATTCCTGGTAACATAAGCTTCAGACTTAGCAGAACCACCAGTCTTGGTTCATCAAGGCCTTGTCCTGTTTCTTCTGGAAGTCTCACCATATTTAACAGTGAAGATGAACTTAATCCTCATCCAAGCCACCCTGGAAGCTTGATTAATAGAAATGAAACTCAACAACGTAGAGAATTGCTTAATGCATCTTTTGATGATCGAGTGCCTATTCAGTATCATGGAGGTGCTTCTACTGATTTTAGATCTAATGCACCAGCATTGGATTCCTTTGGCAACTTAGCAAGAAGTCCCACAATTTCTCCTGTCGCGGATGTGATTAGAGATGGGGATGGTACAAGAGAAGTGGTGGATATGAACTTGTTTTCTCCAAGAATTCATACAGAGGCAGAAAATGTTGAGACAAGACATACTGATAGACGAAATGGGGCTCGAGAACCTGTCGATCGAAATGTACGCTTCAGCCGAACTTTAAGTGTTGGAAGACTTAGAGATAGAGTACTCCGACGATCAACATTATCTGAGTTCACGTTTGGCCCTCTGCAACAGGAGAGGGAAGCAAGAGATGCTAGTTGGGACAGAGGAAGAGAAGTGGGGGAGAGAGATACGAGAGTGCCACGGACTAGTCAAAATGCTGTGAATTCTCCAACTACAATTTCTAGCTCCTCATTTAGTGTTCATGACTTTGATGTTGAGACTTCACGATCTAGAGAAACAAGGTATCAAGATCTGCTGGAACACAGGTCTAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGAAGCCGGTTTGAAAATCTGTCTGGACATGACAGATCATGCGTCTTGTCTGGTCAGCACAGAAATGGTCGTTGTACATGCCGAAACGGTAGCCGTGATACGAACTCAACTGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTGATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCGGTTGTTCTATCTTCCCGCCCATCTGTGTCTTCTATTGGATCTGTTCCTGCACCTAATGAAGTCGTGGAATCTTTGCCTGTGAAATTATACACAAAGTGCCACAAACATCAAGAAGATGCTGTGCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTACTTCCTTGTCACCATGAATTCCATGAAACTTGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCACTATGTAGAGGGGACATTTGTGTATCAGATACACTGCCAATGGAGAACTAA 1680 0.4357 MGSSGSKANSSACSSSSSSSGSFRKGRSKRHRGFPSYCLGTTSGSHDSDHEDQVCDQNKVNGSGVEIVSDEAKSKSFRKAKYDDEMPPNIDLGEWDHTASRTGSSSNHVSSTQSLNPSSRFLSRFSFIPGNISFRLSRTTSLGSSRPCPVSSGSLTIFNSEDELNPHPSHPGSLINRNETQQRRELLNASFDDRVPIQYHGGASTDFRSNAPALDSFGNLARSPTISPVADVIRDGDGTREVVDMNLFSPRIHTEAENVETRHTDRRNGAREPVDRNVRFSRTLSVGRLRDRVLRRSTLSEFTFGPLQQEREARDASWDRGREVGERDTRVPRTSQNAVNSPTTISSSSFSVHDFDVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCVLSGQHRNGRCTCRNGSRDTNSTDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKCHKHQEDAVQCYICLVEYEDGDSMRVLPCHHEFHETCIDKWLKEIHRVCPLCRGDICVSDTLPMEN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00308 559 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 558 - -
Arst5g00308 559 SMART ring_2 504 545 IPR001841 -
Arst5g00308 559 MobiDBLite consensus disorder prediction 84 116 - -
Arst5g00308 559 Pfam Ring finger domain 503 546 IPR001841 -
Arst5g00308 559 SUPERFAMILY RING/U-box 483 552 - -
Arst5g00308 559 MobiDBLite consensus disorder prediction 331 349 - -
Arst5g00308 559 ProSiteProfiles Zinc finger RING-type profile. 504 546 IPR001841 -
Arst5g00308 559 MobiDBLite consensus disorder prediction 98 116 - -
Arst5g00308 559 MobiDBLite consensus disorder prediction 310 349 - -
Arst5g00308 559 MobiDBLite consensus disorder prediction 312 330 - -
Arst5g00308 559 FunFam Putative RING zinc finger domain superfamily protein 473 551 - -
Arst5g00308 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 551 IPR013083 -
Arst5g00308 559 MobiDBLite consensus disorder prediction 1 23 - -
Arst5g00308 559 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00308 Arst-Chr5 2555564 2559965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00308 223 553 C3H Transcription Factor Family AT5G45290 62.242 3.55e-121 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00308 - - gmx:100786091 803.897