Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00275 CCTTCACACAAGACTTTTAGGATCAAGAAGAAGCTGGGCAAGAAGATGAGGCAGAACAGGCCCATTCCTTACTGGATCCGCATGAGGACGGACAATACCATCAGGTATAATGCGAAGCGCAGGCACTGGCGCCGCACCAAGCTAGGGTTCTAA 153 0.5163 MPSHKTFRIKKKLGKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00275 51 Gene3D Ribosomal protein L39e 1 51 IPR023626 -
Arst5g00275 51 PANTHER RIBOSOMAL PROTEIN L39E 1 51 - -
Arst5g00275 51 Pfam Ribosomal L39 protein 9 49 IPR000077 GO:0003735|GO:0005840|GO:0006412
Arst5g00275 51 Hamap 50S ribosomal protein L39e [rpl39e]. 1 51 IPR000077 GO:0003735|GO:0005840|GO:0006412
Arst5g00275 51 SUPERFAMILY Ribosomal protein L39e 3 50 IPR023626 -
Arst5g00275 51 ProSitePatterns Ribosomal protein L39e signature. 30 46 IPR020083 GO:0003735|GO:0005840|GO:0006412
Arst5g00275 51 FunFam 60S ribosomal protein-like L39 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00275 Arst-Chr5 2421753 2422211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00275 1 51 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 92.157 3.04e-30 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00275 K02924 - gmx:100801450 111.309