Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00273 ATGGAAGATGAACAAACCAATGAGATTCTCCAAGAGCTCCTCAAAGTCGAGGTCGACATTCAAGATGTTCAAGAGCAAATTAGAGTGTTAGTTGAGAGGCAAGAGAAGTTGTACGAGAAAAAATCCGAGCTCAGTGCTATTCTGGAAGCGTGCAGAGAATCTGGGAATGAGGTTAATAATGGGGCTTCCATTTCTGTGGAGAATTGGTCTGGGGAATTTCAATGGGACTCTCAAGCTGATGATCTCAGGTTGAACATTTTTGGCATTTCCTCTTACCGTGCAAACCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGGGATGTCTTGGTCATTATGGCTGCAGGTGGTGGCAAGAGTCTTTGCTATCAGCTTCCAGCTGTTCTTCGTGACGGGATTGCTCTTGTTGTCAGTCCCTTGCTTTCCTTAATCCAAGATCAGGTAATGGGTTTGACTGCCTTGGGCATTCCGGCACATATGTTGACTTCGACAACAAGTAAGGAAGATGAGAAATTCATATACAAAGCATTGGAGAAGGGTGAGGGGGAACTCAAAATATTGTATGTCACTCCTGAAAAGATATCAAAAAGCAAGAGATTCATGTCAAAGCTTGAAAAGTGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGCCATGACTTTCGACCTGACTACAAAAACCTTGGTATTCTCAAGACTCAATTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAAAGGGTCCAAAATGATCTGATGGATATGTTGCATATTCCAAGATGTGTCAAATTTGTCAGCACAGTGAATAGGCCAAACTTATTTTATATGGTGAAGGAAAAATCATCTGTTGGAAAGGTGGTTATTGATGAAATTGCTGAGTTCATTAAAGAATCTTATCCAAATAATGAATCAGGAATTGTATATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTACGGGAGAGAGGAATTAAAGCCAATTTCTATCATGCAGATATGGATGTAAATGCTCGAGAAAAAGTACATATGTGGTGGAGCAGTAACAAGCTGCAGGTCATAGTTGGTACAGTAGCATTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACTTACTATCAGGAAAGTGGTCGAGCTGGACGAGATGGACTTCCTTCTGAATGTCTACTATACTTTAGACCTGCTGATGTTCCACGACAGAGTTCAATGGTCTTCTACGAAAATTCAGGATTGCAGAACTTGTATGACATTGTACGATATTGTCAGTCCAAACGACAATGCCGACGAGCTGCCTTTTTCCGGCATTTTGCTGAGCCTCTGCAAGAGTGCAATGGGATGTGTGACAACTGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCGCGACACGCAAAACTGATGGTTTCATTGTTGCAAGATATGCAAGCAAATGATCAGAGGACAACAATGTTGCAATTAGTTGAAAAAATGAAAGTGAAGCAAAAGGAACTAGGTTCGGATTTGAAAAAAGAGGAAATTGAGCAGCTCATCTTACATCTATTGCTGGAGCATGTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCAACAAATGCTTACATTGCTTTAGGACCACTAACCAAGCCAATATTGCAAGGGAAGAAGGCTGTGAAGCTTGAGATTTATAGTGAGCAAAGAACTAAGGCTGCTGTAAGATCAGCGAAACGCAGCCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAGTTGAGAAAAGAATTGTCTTCTGTTCATGGAGGAATATTACCACACTCTATCTTGTCCACCCAACAAATCAGCTTATTAAGTTCTCAAAAACCAAGGTCACTAGAACAGTTGGAGAAGGTAATTGGAAAATTGAAGACAGAAAAGTATGGTAGTAGAATTCTTGAGCAGATTGAAAAATATTCTGATTTCAAGCCAGATGATCAGCAAGAAAGTGGTGCTAGTGCTGCTAAGAGATCAAGGACCAAGAAGAACCTTGTTCTTATTGAGAGTAGTGAAGATGAAGCATGA 2118 0.4098 MEDEQTNEILQELLKVEVDIQDVQEQIRVLVERQEKLYEKKSELSAILEACRESGNEVNNGASISVENWSGEFQWDSQADDLRLNIFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLMDMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIKESYPNNESGIVYCFSRKECEQVAKELRERGIKANFYHADMDVNAREKVHMWWSSNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPADVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRAAFFRHFAEPLQECNGMCDNCAFSSEVKEVDVSRHAKLMVSLLQDMQANDQRTTMLQLVEKMKVKQKELGSDLKKEEIEQLILHLLLEHVLKEEFQHTAYATNAYIALGPLTKPILQGKKAVKLEIYSEQRTKAAVRSAKRSLGSSGLELKLDELRKELSSVHGGILPHSILSTQQISLLSSQKPRSLEQLEKVIGKLKTEKYGSRILEQIEKYSDFKPDDQQESGASAAKRSRTKKNLVLIESSEDEA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00273 705 ProSiteProfiles HRDC domain profile. 598 677 IPR002121 GO:0003676
Arst5g00273 705 PANTHER DNA HELICASE RECQ FAMILY MEMBER 70 661 - -
Arst5g00273 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 425 IPR027417 -
Arst5g00273 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 100 275 IPR014001 -
Arst5g00273 705 FunFam ATP-dependent DNA helicase 602 672 - -
Arst5g00273 705 Pfam RecQ zinc-binding 422 478 IPR032284 -
Arst5g00273 705 Pfam HRDC domain 607 666 IPR002121 GO:0003676
Arst5g00273 705 Gene3D - 47 282 IPR027417 -
Arst5g00273 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 300 449 IPR001650 -
Arst5g00273 705 MobiDBLite consensus disorder prediction 670 705 - -
Arst5g00273 705 Pfam DEAD/DEAH box helicase 94 262 IPR011545 GO:0003676|GO:0005524
Arst5g00273 705 FunFam ATP-dependent DNA helicase 483 583 - -
Arst5g00273 705 SMART RQC_2 487 584 IPR018982 GO:0006260|GO:0006281|GO:0043138
Arst5g00273 705 Gene3D HRDC domain 602 672 IPR044876 -
Arst5g00273 705 Pfam RQC domain 484 588 IPR018982 GO:0006260|GO:0006281|GO:0043138
Arst5g00273 705 SUPERFAMILY HRDC-like 607 672 IPR010997 GO:0000166|GO:0044237
Arst5g00273 705 SMART ultradead3 88 291 IPR014001 -
Arst5g00273 705 Gene3D - 483 583 IPR036388 -
Arst5g00273 705 Gene3D - 283 479 IPR027417 -
Arst5g00273 705 FunFam ATP-dependent DNA helicase 49 282 - -
Arst5g00273 705 CDD DEXHc_RecQ1 75 282 - -
Arst5g00273 705 CDD SF2_C_RecQ 283 419 - -
Arst5g00273 705 FunFam ATP-dependent DNA helicase 283 479 - -
Arst5g00273 705 Coils Coil 13 40 - -
Arst5g00273 705 Pfam Helicase conserved C-terminal domain 304 409 IPR001650 -
Arst5g00273 705 SMART helicmild6 329 410 IPR001650 -
Arst5g00273 705 NCBIfam RecQ family ATP-dependent DNA helicase 85 510 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00273 Arst-Chr5 2382712 2390080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00273 87 424 Eukaryotic Initiation Factors Gene Family AT3G19760 20.506 2.83e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00273 K10899 - gmx:100817635 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00273 5 2382712 2390080 Arst5g00273 5 2382712 2390080 ECH