Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00262 ATGGATAACGATGGTGGTGGTGGCCAAGGTAATCCATTATCTAACAACATTGTTGTGTTACTTCTTGCAATGGGTTCAGCTGCTTTTGTTGTCTCAATTTACCATCTCATAGCAATTTGTTTTTGCAATAACCGGCAAAATTCAAATAATAATGAGCAAAATCTTCATCAACAAGATGGTGGTGAACCAAGCACTTCTACTTCTGTGGCGCATTTGATTCCGTCGCATAAGTATCACAAGAAAAAGGTTAATGAGAACGGCGAAGAGGCCGATGATCAAGGTGGCGGCAGTGGCGGCACTTGTGCCGTGTGTTTGGGAGATTTTGAAGAGGGTGAGGAGTTGAAGACTTTGCCGGAATGCATGCACTCTTTTCACGTGCCATGCATTGATATGTGGCTCTATTCTCATACAAGTTGTCCCGTTTGCCGCGCCAGCGCCACGCCGTCGCCGGTGGGGCTCAACCATGGCCCGTTAAATGTTTTTGGTGATCATAGTGGTTATGGCTTGAATAATAATAATGCACGCCAAGGCATTGATATGGTGCAAATTGCTATTGTCCAAAGTGGTTTTGTTCGAAGGTGA 582 0.4485 MDNDGGGGQGNPLSNNIVVLLLAMGSAAFVVSIYHLIAICFCNNRQNSNNNEQNLHQQDGGEPSTSTSVAHLIPSHKYHKKKVNENGEEADDQGGGSGGTCAVCLGDFEEGEELKTLPECMHSFHVPCIDMWLYSHTSCPVCRASATPSPVGLNHGPLNVFGDHSGYGLNNNNARQGIDMVQIAIVQSGFVRR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00262 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 148 IPR013083 -
Arst5g00262 193 SUPERFAMILY RING/U-box 100 149 - -
Arst5g00262 193 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Arst5g00262 193 Pfam Ring finger domain 100 143 IPR001841 -
Arst5g00262 193 CDD RING-H2_EL5-like 101 143 - -
Arst5g00262 193 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 146 IPR044675 -
Arst5g00262 193 SMART ring_2 101 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00262 Arst-Chr5 2305894 2306630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00262 18 147 C3H Transcription Factor Family AT5G17600 35.507 5.87e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00262 - - aip:107639941 381.719