Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00248 ATGGAGGTGAAACTCACCGAATCGGCGATTACGAAGATGTGCGAGAATTCCAGTTCGGCTGAGGATCTGAAGCCGATTTTGCAAGTAATGGACTTCAAGCTTGTGCAGTCGCAACAGAACAATACCGAGAGGTTCCGTTTGGTTCTCTCTGATGGCTCCCATTACCAGCAAAGCATGCTCGCTACGCAGAAGAACGATTTGATCCATTCTGGCAAGTTGCAGAGAGGTTCTATCATCGTTCTCAATCAGTACACATGCAGCCTTGTCCAGGGCCGATCGATCATTATTATCATTGAACTAGATATTCTGTTGGACAAATGCGAGCTACTTGGAAAACCGGTCAGTGCAACAAAATTTGCTCCGTCACAATCTGCAACTGATCAATCAGGAATTACCTCTGGGAATAATGTGCCTGGTCCTTCTCCGGAACCCCCAAAAGTAAATCAACCTGCTAGTAGTGTTGGCTCTTCTAGTTTTGACATGGGGAGATTCGGTGCATCAAATGCCCCTCCTGCTTATCCAAAAGCAGAGCCTAGAGCTATGGGACCTAGTTCTGGCATTGCAGGTTATAGTTCAACAAATGTTCCTTTTACTTATCCTAAACCAGAGCCTGGAGCTACATTACCTAGATCAGGACAGTCTGGTGGGTCTTATGGTGATCAGAATGTGGGTTATCGCAATCCCCAATCTGAGGCATCAAGGCCCTTTCAAAATTCTTATGCTCGTCCACCTCAGCCCATGTATCGACAGCCATCTCCGGTGTACAATAACAGAGGCCCTGCGGCAAGAAATGAAGCTCACCCTAGGATCATTCCAATAGCCGCATTGAATCCATACCAGAATAACTGGACAATTAAAGCTAGAGTAACAGCTAAGGGAGAACTCAGGCACTATAGTAGTGCCCGAGGTGATGGAAAAGTGTTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATCCGGGCAACTTGCTTTAATACTGTGGCTGATCAGTTTTACAATGTAATTGAAGCTGGAAATATCTATCTGCTTTCCAGGGGACATTTAAAGGCAGCAAATAAGGACTTCAATCACCTTCGTAATGATCAAGAACTGACCCTTGATATAGCCACCATTATACAACCATGCCATGATGATGTGTCAATTCCACAGCAGACTTTTAACTTCCGTCCAATTATTGAAGTTGAAACTATTGAAAACAATACTATTTTGGATGTGATTGGTGTGGTGTCTTCTATTAGTCCTACTGCTTCAATTATGAGGAAAAATGGCACTGAAACTCAAAAGAGAACCCTCCAGTTGAAAGACATGTCTGGTCGAAGTGTTGAATTAACCATGTGGGGAAATTTTTGCAATGCAGAAGGACAAAGGCTACAAAGTCTCTGTGATGCTGGAAGATTTCCAGTTTTGGCTGCCAAAGCCGTCAGAGTAAGTGATTTCAACGGGAAGTCAGTTGGGACCATAGCCACTAGCCAGCTATTTGTAGAGCCTGATTTTGTGGATGCTTGTAGGCTGAGGGAATGGTTTGACAAGGAGGGGAGGAATGTTCCTACTATTTCTCTTTCCAGAGAAGCATCTAATTTTGGCAAGTCTGATGTGCGGAAGACCGTATCCCAGATTAAAGATGAGAAATTAGGGACATCTGAGAAGCCTGATTGGATATCTGTTTGTGCAAGTATTTCATACATGAAGGTTGATAACTTCTGCTACACAGCTTGCCCTGTCCTGATAGGTGACAGGCAATGCAACAAAAAAGTGACTAATAATGGAGATGGGAAATGGCGATGTGAAAGGTGTGATCAGACTGTTGATGCTTGTGATTATAGGTACATTCTGCAATTCCAGATTCAGGATCACACTGGCTTGACATGGGTTACTGCTTTCCAGGAGAGTGGCGAGGAGATCATGGGTATGTCTGCTAAAGAATTGTATAACCTTAAATTCGAACAAATGGATGATGAAAAATTTGCAGAAATCATGCGTAAGGTTCTCTTTGGTAAGTATATGTTCAAGTTGAAAGTAAAGGAGGAAACGTACAGTGATGAGCAGCGTGTCAAGTCGACGGTAGTAAAAGCAGAGAAGGTAAGCTTTCCATCTGAATCTAAATTTCTTCTGGATATGATTGATAAGCTTAAGTCTGAGAATGGAGAAGGTACCAATCCTAGCACCATAGCTAATACTGCCGGACTAGTCAGCACTGGAACTGGACAATCTATGCCACCACCAGTTTACAATTCTGTGATGAGCAACAGTAGTGCCGGTATTGATTATAGAAACCAATATAGCAACTCTTTTGCTACTTCAACTGGTGCTCCTGCTCCTGCTTCATATATGTCATGTAGCATATGTGGTTGCTCTGGTCACAGCTCTGCACAATGCCCTAATAATATGATGAATATGCCTGCTCAGCCGGCAGCAAGAGGCGGTGGATTCACAAGCAGGGCATCTGCCGGATCAGGAGGAGCCTCTGGCGAATGCTTTAAATGCCATCAACCTGGCCATTGGGCAAAAGATTGCCCTGCTTACAGTGCAGCACCACCAGCTTATGGAAGCGCTAACGGAATGCAAGGTAGATATGGAATTGCCCCAAAGCAACAATATGGAGGATATTGA 2613 0.4386 MEVKLTESAITKMCENSSSAEDLKPILQVMDFKLVQSQQNNTERFRLVLSDGSHYQQSMLATQKNDLIHSGKLQRGSIIVLNQYTCSLVQGRSIIIIIELDILLDKCELLGKPVSATKFAPSQSATDQSGITSGNNVPGPSPEPPKVNQPASSVGSSSFDMGRFGASNAPPAYPKAEPRAMGPSSGIAGYSSTNVPFTYPKPEPGATLPRSGQSGGSYGDQNVGYRNPQSEASRPFQNSYARPPQPMYRQPSPVYNNRGPAARNEAHPRIIPIAALNPYQNNWTIKARVTAKGELRHYSSARGDGKVFSFDLLDSDGGEIRATCFNTVADQFYNVIEAGNIYLLSRGHLKAANKDFNHLRNDQELTLDIATIIQPCHDDVSIPQQTFNFRPIIEVETIENNTILDVIGVVSSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTMWGNFCNAEGQRLQSLCDAGRFPVLAAKAVRVSDFNGKSVGTIATSQLFVEPDFVDACRLREWFDKEGRNVPTISLSREASNFGKSDVRKTVSQIKDEKLGTSEKPDWISVCASISYMKVDNFCYTACPVLIGDRQCNKKVTNNGDGKWRCERCDQTVDACDYRYILQFQIQDHTGLTWVTAFQESGEEIMGMSAKELYNLKFEQMDDEKFAEIMRKVLFGKYMFKLKVKEETYSDEQRVKSTVVKAEKVSFPSESKFLLDMIDKLKSENGEGTNPSTIANTAGLVSTGTGQSMPPPVYNSVMSNSSAGIDYRNQYSNSFATSTGAPAPASYMSCSICGCSGHSSAQCPNNMMNMPAQPAARGGGFTSRASAGSGGASGECFKCHQPGHWAKDCPAYSAAPPAYGSANGMQGRYGIAPKQQYGGY 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00248 870 Gene3D - 3 117 IPR012340 -
Arst5g00248 870 PANTHER REPLICATION FACTOR A 1, RFA1 283 689 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Arst5g00248 870 Gene3D - 269 379 IPR012340 -
Arst5g00248 870 SUPERFAMILY Nucleic acid-binding proteins 269 381 IPR012340 -
Arst5g00248 870 CDD RPA1N 9 92 IPR007199 GO:0003677|GO:0005634|GO:0006260
Arst5g00248 870 FunFam Replication protein A subunit 4 117 - -
Arst5g00248 870 SUPERFAMILY Retrovirus zinc finger-like domains 808 844 IPR036875 GO:0003676|GO:0008270
Arst5g00248 870 Pfam OB-fold nucleic acid binding domain 283 355 IPR004365 GO:0003676
Arst5g00248 870 MobiDBLite consensus disorder prediction 210 245 - -
Arst5g00248 870 SUPERFAMILY Nucleic acid-binding proteins 534 711 IPR012340 -
Arst5g00248 870 CDD RPA1_DBD_B 403 510 - -
Arst5g00248 870 SMART c2hcfinal6 779 795 IPR001878 GO:0003676|GO:0008270
Arst5g00248 870 SMART c2hcfinal6 825 841 IPR001878 GO:0003676|GO:0008270
Arst5g00248 870 FunFam Replication protein A subunit 520 711 - -
Arst5g00248 870 CDD RPA1_DBD_A 272 375 - -
Arst5g00248 870 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Arst5g00248 870 MobiDBLite consensus disorder prediction 148 163 - -
Arst5g00248 870 ProSiteProfiles Zinc finger CCHC-type profile. 826 840 IPR001878 GO:0003676|GO:0008270
Arst5g00248 870 SUPERFAMILY Retrovirus zinc finger-like domains 771 841 IPR036875 GO:0003676|GO:0008270
Arst5g00248 870 Gene3D - 380 519 IPR012340 -
Arst5g00248 870 SUPERFAMILY Nucleic acid-binding proteins 387 516 IPR012340 -
Arst5g00248 870 MobiDBLite consensus disorder prediction 119 252 - -
Arst5g00248 870 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Arst5g00248 870 Gene3D - 777 846 - -
Arst5g00248 870 Gene3D - 520 711 IPR012340 -
Arst5g00248 870 Pfam Replication protein A OB domain 392 495 IPR031657 -
Arst5g00248 870 Pfam Zinc knuckle 825 840 IPR001878 GO:0003676|GO:0008270
Arst5g00248 870 MobiDBLite consensus disorder prediction 119 137 - -
Arst5g00248 870 FunFam Replication protein A subunit 381 519 - -
Arst5g00248 870 FunFam Replication protein A subunit 269 378 - -
Arst5g00248 870 CDD RPA1_DBD_C 537 710 IPR047192 -
Arst5g00248 870 Pfam Replication factor-A C terminal domain 553 704 IPR013955 -
Arst5g00248 870 NCBIfam replication factor-a protein 1 (rpa1) 244 710 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00248 Arst-Chr5 2223043 2226602 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00248 1 819 Core DNA Replication Machinery Family AT5G45400 49.194 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00248 K07466 - qsa:O6P43_033421 1097.42