Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00215 ATGGGAAGTAGTTATGGTGGCGGAATTGGAGGAGGGGAAGGTGGTTATGGGGTGGTGATGAGTATGACGAGAGAGCCCAAGCCTAGGTTGAGGTGGACAACCGATCTTCATGATCGCTTTGTGGATGCCGTCACCAAACTTGGTGGCCCGGACAAAGCAACTCCCAAATCTGTTCTGAGGATAATGGGTTTGAAAGGCTTGACATTGTATCATTTGAAGAGCCACTTACAGAAGTATAGACTTGGACAACAAGCTAAAAAACAAAATGAAGAACATCACAAAGAGAACAATAGATATTCATATGTGAATTTCAGCAATAGCTCTTCAGAGTTTAGCACTAGTTTCAGAGGTGATAATGAAAGAGGAGAAATCCCAATAGCAGAGGCACTTAGACATCAAATTGAAGTCCAAAAGAGATTAGAAGAACAGTTAGAGGTACAGAAGAAATTGCAGATGAGAATAGAGGCTCAAGGGAAGTATTTGCAAGCTGTGTTAGAGAAAGCTCAGAGGACACTTTCCATGGAAGGTTCAGGCAATAATCTAGAAGCATCAAGAGCTCAATTGACCGAATTCAATTCTGCTTTGTCCAATTTCATGGAAAACATGAACAACAAAGATAGCAAACAAAGCATATTAGACATGAATGATTTTTATAGTAAAGTCCATGGTTCATGTTTCCATAATTATCATGAAGTAATAAGGAGAGAAGAAAATATTGATCAAAAGCCTAAGATTGAAGAGGGTTCAATTCAGTTTGACTTAAACATCAAAGATAACTATGATTTTGTATCTGCACGTGGTGCTGGATCTGAAATTGAAGCCAAAATGCTTTCATATAGGCTATGA 846 0.3889 MGSSYGGGIGGGEGGYGVVMSMTREPKPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRIMGLKGLTLYHLKSHLQKYRLGQQAKKQNEEHHKENNRYSYVNFSNSSSEFSTSFRGDNERGEIPIAEALRHQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQAVLEKAQRTLSMEGSGNNLEASRAQLTEFNSALSNFMENMNNKDSKQSILDMNDFYSKVHGSCFHNYHEVIRREENIDQKPKIEEGSIQFDLNIKDNYDFVSARGAGSEIEAKMLSYRL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00215 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 84 IPR017930 -
Arst5g00215 281 SUPERFAMILY Homeodomain-like 26 84 IPR009057 -
Arst5g00215 281 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 209 IPR044848 GO:0003700
Arst5g00215 281 FunFam Myb family transcription factor 26 84 - -
Arst5g00215 281 Coils Coil 127 157 - -
Arst5g00215 281 Pfam MYB-CC type transfactor, LHEQLE motif 125 171 IPR025756 -
Arst5g00215 281 Pfam Myb-like DNA-binding domain 30 80 IPR001005 -
Arst5g00215 281 Gene3D - 26 84 - -
Arst5g00215 281 NCBIfam myb-like DNA-binding domain, SHAQKYF class 27 82 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00215 Arst-Chr5 1989086 1993230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00215 1 197 G2-like Transcription Factor Family AT3G24120 50.249 2.27e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Arst5g00215 Myb_DNA-binding 6.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00215 - - gmx:100810146 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00215 5 1989086 1993230 Arst5g00215 5 1989086 1993230 ECH