Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00207 ATGGGTCGCAAACACGACGCCGTTGTCGCAGCCGAACCAGTTGCCGTGCCATCACCAGCAGGAGAAGCCCCAAACAGTCCCAAACTCAAATCCGAGAAGAAGAAGAAAAAGCACAAGAACAAAGACAAACACAACCAAGAACAAAACGGAACCGCTAGTCCAAAAAGAAAGCTCGACGAGATCCAGCCTCGAAACGCCGCCGAATCCGACAAGGGGAAAAAGAAGAAGAAGAAGCACAAGCGCGATTCGGAAGAGAACGTGGAGGAAACCAAAGCTGAATCCGTTGATGGAGCTGGCGGAGGCGGCGGAGGAGGAGATGAGTCGGTTACCGACGGGCATGTGGCGGTTACCGGGAAGAACGCCGGAGAGGCGAAGTACGCGCCGGTGAAGAGCTTCGCTGGTTCGGGGCTGCCGGAAAACGTGCTGGAGTGCTGCAAGGGCTTCGAGAAGCCGTCGCCGATTCAGTCACGTGCATGGCCTTTCTTGTTGGACGGTCGTGATCTCATCGGAATCGCTGCAACTGGTTCAGGGAAGACGCTGGCGTTTGGGATTCCTGCCGTTATGCACGTTCTGAGCAAGCGGAAGAATAAAGCGGTGAAGGGTCGGAACCCTCTTTGCCTCGTGCTCTCTCCTACCAGGGAGCTAGCTCAACAAATTTCAGATGTTATGTGTGATGCTGGTAAGTCTTGTGGTGTGGAGTCAGTTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCGTCACTGAAATCTGGCAGTAAGTTAATTTCATTAAGTATACAGGATTTGATTGAAATGGGTGTCTGTAGCCTAAAAGATGTATCTTTTGTGGTGCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTCGAACAAGTAGTCCGCTCTATACTGGGTCAGACATGCTCTGTTCGCCAAATGGTGATGTTTAGCGCTACTTGGCCCTTACCAGTTCATCAGTTAGCACAGGAGTTTATGGATCCCAACCCTGTAAAAGTTGTTGTAGGTTCAGAAGATTTAGCTGCGAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGTGCGCGTGATAACCGACTGGTTGCTTTACTGGAAAAATACCACAAATCTCAGAGGAACCGAGTATTGATCTTTGTTTTGTACAAAATGGAAACCACACGAGTTGAAAGGATGCTTCAACAAGGAGGTTGGAAGGTTGTGTCCATACATGGAGACAAAGCACAACATGATCGTACAAAGGCACTTTCATTATTCAAGAATGGGAGCTGTCCTTTAATGATTGCTACTGATGTGGCTGCACGTGGATTGGATATTCCAGATGTTGAAGTTGTTATCAACTATAGTTTTCCTTTAACTACAGAAGATTATGTTCATAGAATTGGTCGGACTGGACGAGCTGGTAAAAAGGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGTCTTGCTGGGGAGCTTGTGAATGTATTAAGAGAAGCTGGACAAATTGTGCCAGATGCCCTTTTAAAATTTGGCACACATGTAAAGAAAAAGGAGTCGAAGCTTTATGGGGCCCACTTTAAGGAAATTTCCGCTGATGCACCGAAGTCTCAAAAAATTACATTTGACAACTCTGACGAAGACTAA 1638 0.4737 MGRKHDAVVAAEPVAVPSPAGEAPNSPKLKSEKKKKKHKNKDKHNQEQNGTASPKRKLDEIQPRNAAESDKGKKKKKKHKRDSEENVEETKAESVDGAGGGGGGGDESVTDGHVAVTGKNAGEAKYAPVKSFAGSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLSKRKNKAVKGRNPLCLVLSPTRELAQQISDVMCDAGKSCGVESVCLYGGTSKGPQISSLKSGIXKLISLSIQDLIEMGVCSLKDVSFVVLDEADRMLDMGFEQVVRSILGQTCSVRQMVMFSATWPLPVHQLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDNRLVALLEKYHKSQRNRVLIFVLYKMETTRVERMLQQGGWKVVSIHGDKAQHDRTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEISADAPKSQKITFDNSDED 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00207 546 Coils Coil 73 93 - -
Arst5g00207 546 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 280 288 IPR000629 -
Arst5g00207 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 484 IPR027417 -
Arst5g00207 546 SMART ultradead3 147 351 IPR014001 -
Arst5g00207 546 Gene3D - 340 513 IPR027417 -
Arst5g00207 546 MobiDBLite consensus disorder prediction 1 116 - -
Arst5g00207 546 CDD SF2_C_DEAD 348 480 - -
Arst5g00207 546 Pfam DEAD/DEAH box helicase 153 320 IPR011545 GO:0003676|GO:0005524
Arst5g00207 546 Coils Coil 29 49 - -
Arst5g00207 546 MobiDBLite consensus disorder prediction 43 70 - -
Arst5g00207 546 CDD DEADc 146 335 - -
Arst5g00207 546 Pfam Helicase conserved C-terminal domain 362 471 IPR001650 -
Arst5g00207 546 SMART helicmild6 390 471 IPR001650 -
Arst5g00207 546 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 510 IPR001650 -
Arst5g00207 546 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 68 506 - -
Arst5g00207 546 FunFam ATP-dependent RNA helicase RhlB 337 514 - -
Arst5g00207 546 Gene3D - 108 339 IPR027417 -
Arst5g00207 546 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 156 IPR014014 GO:0003724
Arst5g00207 546 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 334 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00207 Arst-Chr5 1916354 1920928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00207 128 479 Eukaryotic Initiation Factors Gene Family AT3G19760 32.865 4.92e-49 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00207 K14811 - gmx:100305353 837.795