Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00164 ATGTATGGGGATTGCCAAGTAATGTCTACAATGGGAGGCAACGTAGTTGTAAACTCATCAGAAACACTTTTCTCTTCTCCGATCCAAAACAACAGCTTCACCTTCATGCCTACCATGCATTTTCATCACTCTTTTCCCACCATGGTACGCAAAACAAGCCTTTCTCTTCACCTTAATTATTATTGCTTCTTGTTTGATCAGTGTGCGGTTTTAGAAGAAGAGACTGATCAACAACAGCCTCAGAATAAGAAGAAACGTTACCACAGGCACACTGCACGCCAGATCCATGAGATGGAAGCTTTGTTCAAGGAATGTCAACACCCGGATGATAAGCAACGGCTGAAACTTAGCCATGAACTCGGCCTTAAACCGCGCCAGGTTAAGTTCTGGTTCCAGAACCGCCGAACCCAGATGAAGGCACAACAAGATCGGGCTGAAAATGTGATTCTAAGAGCGGAGAATGAGACTCTAAAGAATGAGAATTATCGTCTACAAGCATCACTGCGTAGTGTTATATGTCCCAATTGTGGTGGTCCAGGAATAATGGGAGCTGATCTTGGCTTGGATGAACAACAACTTCGCATTGAAAATGCCAGGTTAAGAGAGGAGTTGGAACGTGTGTGTTGCCTGACATCAAGATACAGCGGGCGTCCAATCCAAACAATGGCACCAGCACCAGCACTGATGGCCCCATCACTGGACTTGGACATGAACATCTACCCAAGGCACTACGTTGATCCCACCATTCCCCCGTGCAACGAGATGATTCCTGTTCCAATGCTTCCCCCGGAGGCTTCTCAGTTCCCGGAGGGCGGTCTCTTAATGGAAGAGGAGAAGTCTCTGGCCATGGACCTTGCCGCCTCTTCCATGGCTGAGCTTGTCAAGATGTGCCATGCTAACGAGCCGCTTTGGATCCGTGGCTGCGACGGCGATAGGGAAGTTCTTAACTTTGAGGAGCACGGCAGGCTGTTCCCGTGGCCGTTGAATCTCAAGCACCGGACTGACCTCCGGACTGAAGCTAGCCGTGACACCGCTGTTGTCATCATGAATAGTGTCACTCTTGTTGATGCCTTCCTCGATGCTAACAAGTGGATGGAACTGTTTCCCACAATTGTTTCTAGAGCAAAAACGGTGCAAATAATATCTTCAAATGCTTCTGGCCATGCAAGCGGGTCTCTTCAGCTGATGTATGCGGAATTCCAAGTTCTTTCTCCATTGGTATCGACTCGTGAGACTCATTTCCTTCGGTACTGTCAACATAACGCTGAGGAGGGAACGTGGGGCATTGTTGACTTCCCAATCGATAGCTTTCAGCAGAACCTGCACCCTTCTTATCCCAGATACTGCAGGCGACCCTCTGGCTGTCTCATTCAAGATATGCCAAATGGATATTCAAGGGTAACATGGATTGAGCATGCAGAAGTAGAAGAGAAACCCGTGCATCAGATATTCAGCAATTATGTTTACAGTGGTATGGCTTTTGGTGCACAGCGGTGGTTGGGTGTTTTGCAGAGACAATGTGAAAGGGTTGCAAGCCTCATGGCCAGAAACATTTCAGATCTTGGAGTGATACACTCACCAGAAGCTAGAAAGAACTTGATGAAACTTGCACAGAGGATGATAAGAACGTTCAGCCTCAACATGAGCACGTCAAGTGGTCAATCATGGACTGCAATATCAGATTCCCCTGAAGATACCGTTAGAATCACCACCAGGAAGATCACAGAGCCTGGTCAACCCAACGGTGTCATTCTGGGTGCTGTTTCAACCACTTGGCTTCCCTATTCCCACACCAAGGTCTTCGATCTGTTACGCGATGAACGCCACAGATCTCAGATGGATGCTCTTTCCAATGGGAATTCACTCAATGAAGTTGCTCACATTGCAAATGGTTCCCATCCAGGAAACTGCATTTCCCTTCTCCGCATCAATGTTGCGAGCAACTCATCGCAGAACGTGGAGCTAATGCTGCAAGAAAGCTGTACGGACCAATCAGGGAGTGTGGTGGTGTACACTACCATTGCTGTGGACTCCATTCAGGTAGCCATGAGCGGAGAGGATCCTTCATGCATTGCGCTTCTCCCACAAGGCTTCATTATAACGCCAATGCCGCCATCAAGCAACAACTCGTCCTCTTCTGAAGCTCTTATCAATGACCATGGCTGCCTCCTCACCGTTGGCCTCCAGATTCTAGCTAGCACCATTCCCTCCGCCAAGCTCAACCTGTCCAGCGTCACCTCCATCACCAACCACCTCTGCAGCACCGTGCACCAGATCGAAGCCTCTCTTTGCAACACCGCCAACAATGAGCCAACCACCACCACTGCACCTCCCAAAACAGTGAACTAA 2349 0.487 MYGDCQVMSTMGGNVVVNSSETLFSSPIQNNSFTFMPTMHFHHSFPTMVRKTSLSLHLNYYCFLFDQFXAVLEEETDQQQPQNKKKRYHRHTARQIHEMEALFKECQHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRAENVILRAENETLKNENYRLQASLRSVICPNCGGPGIMGADLGLDEQQLRIENARLREELERVCCLTSRYSGRPIQTMAPAPALMAPSLDLDMNIYPRHYVDPTIPPCNEMIPVPMLPPEASQFPEGGLLMEEEKSLAMDLAASSMAELVKMCHANEPLWIRGCDGDREVLNFEEHGRLFPWPLNLKHRTDLRTEASRDTAVVIMNSVTLVDAFLDANKWMELFPTIVSRAKTVQIISSNASGHASGSLQLMYAEFQVLSPLVSTRETHFLRYCQHNAEEGTWGIVDFPIDSFQQNLHPSYPRYCRRPSGCLIQDMPNGYSRVTWIEHAEVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIHSPEARKNLMKLAQRMIRTFSLNMSTSSGQSWTAISDSPEDTVRITTRKITEPGQPNGVILGAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSVVVYTTIAVDSIQVAMSGEDPSCIALLPQGFIITPMPPSSNNSSSSEALINDHGCLLTVGLQILASTIPSAKLNLSSVTSITNHLCSTVHQIEASLCNTANNEPTTTTAPPKTVN 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00164 783 SMART HOX_1 83 146 IPR001356 GO:0003677
Arst5g00164 783 CDD START_ArGLABRA2_like 280 509 - -
Arst5g00164 783 SUPERFAMILY Bet v1-like 277 512 - -
Arst5g00164 783 SUPERFAMILY Homeodomain-like 74 143 IPR009057 -
Arst5g00164 783 Coils Coil 136 161 - -
Arst5g00164 783 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Arst5g00164 783 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 79 764 IPR042160 -
Arst5g00164 783 ProSiteProfiles START domain profile. 276 513 IPR002913 GO:0008289
Arst5g00164 783 SMART START_1 285 510 IPR002913 GO:0008289
Arst5g00164 783 FunFam Homeobox-leucine zipper protein HDG1 72 158 - -
Arst5g00164 783 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Arst5g00164 783 Pfam START domain 286 510 IPR002913 GO:0008289
Arst5g00164 783 Gene3D - 70 154 - -
Arst5g00164 783 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Arst5g00164 783 Gene3D - 338 499 IPR023393 -
Arst5g00164 783 SUPERFAMILY Bet v1-like 528 761 - -
Arst5g00164 783 CDD homeodomain 85 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00164 Arst-Chr5 1436850 1442093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00164 65 767 Homeobox Transcription Factor Family AT5G46880 60.763 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst5g00164 START 4.2e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00164 - - gmx:100812829 1233.39