Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00158 ATGAGTTTTCAAGACATCGAGGCCGGCCGGCCGTTCGCTTCCCGCCGAGGCAACATCAACGGCAAGCAAGACCCCACTCAGGCGGTGGCTGCCGGAATTTTCCAGATCAACACTGCGGTCTCCACCTTCCAGAGGCTCGTTAACACCCTAGGAACCCCCAAAGACACCCCCGAGCTCCGCGAGAAGCTGCACAAGACAAGGCTGCACATTGGACAATTGGTGAAGGACACTTCAGCGAAGCTTAAACAAGCTAGTGAAATTGATCACCAATCTAATATCAATGCAAGCAAGAAGATAGCAGATGCTAAACTCGCGAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTGCGGCAGAGAGGGAAACAGCTTACACCCCATTTGTTCCACAAGCAGCTCCATCCAGCTATACAGCTAATGAAGCAGTTGCTAATTCTGGTAAGATGCCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGGCAGGAGGTGGTGTTTTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAAGAAAGAGATCAAGGCATTCAAGAAATTCAGCAGCAAATTGGTGAAGTAAATGAAATTTTTAAAGACCTTGCTGTGCTTGTGCATGAACAAGGAGCTATGATTGATGATATTGGGTCCAACATTGAGCATTCCCATGCAGCAACTGCACAAGCAAGATCTCAACTTGCTAAAGCTTCAAAGACTCAAAGATCAAATTCATCTTTGGTAATATATACTGCGTAA 771 0.4617 MSFQDIEAGRPFASRRGNINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHQSNINASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAAPSSYTANEAVANSGKMPEQRALLVESRRQEVVFLDNEIAFNEAIIEERDQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHAATAQARSQLAKASKTQRSNSSLVIYTA 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00158 256 FunFam Syntaxin-22 like 172 256 - -
Arst5g00158 256 CDD SynN 23 145 IPR006011 GO:0016020
Arst5g00158 256 PANTHER SYNTAXIN 26 251 IPR045242 -
Arst5g00158 256 SMART SynN_4 14 127 IPR006011 GO:0016020
Arst5g00158 256 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Arst5g00158 256 Gene3D - 17 133 - -
Arst5g00158 256 Gene3D - 180 243 - -
Arst5g00158 256 FunFam Syntaxin-22 like 20 133 - -
Arst5g00158 256 Pfam SNARE domain 216 254 IPR000727 -
Arst5g00158 256 SUPERFAMILY t-snare proteins 23 234 IPR010989 GO:0016020|GO:0016192
Arst5g00158 256 SMART tSNARE_6 174 241 IPR000727 -
Arst5g00158 256 CDD SNARE_Qa 182 240 - -
Arst5g00158 256 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
Arst5g00158 256 MobiDBLite consensus disorder prediction 1 23 - -
Arst5g00158 256 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00158 Arst-Chr5 1385022 1387678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00158 1 253 SNARE and Associated Proteins AT5G46860 77.165 7.35e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00158 - - gmx:547656 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00158 5 1385022 1387678 Arst5g00158 5 1385022 1387678 ECH