Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00143 AACAACAACAACAACATCAGTGTCAGTGATGCTGTGACAGTAACAAGAGAGGTAGATCACAAGGCTTGTTCGAGCAACAGCAAGGAGGTGGATGACGACGATGCCGATGATTATGTTGTGAATAGGCTTCGTAGGTTATTGGATGCGGTGGAAGAGCCTGCGTTAATGGAGGAGCAGCTCAGTACCAATGACCAATTGCAGGAAGATGAGTTACTTGTGGTGGAGTCGATATACGGAGAAAATGTTAACAAGCTTGAAAGCTGGAAAGGCCTCCGTTGTTTTCAGATCCAAATACACATCGAAGTTTTGGGTGAAATTGCCATTATTGCTAAGCTGAACTCTTCTAATGAACTTGATGTTGCAAGCGGCAATTCGGATGACTTCTTCTACTCTTTCAAAGTTCAGTATCTTCCACCAATCGTTTTGACCTGCTTATTGCCCAAGTCATATCCAAGCCACCAACCACCTTTATTTACAGTCTCTGTTCAATGGTTGGAATCTTTAGATATTTTAAGTCTATGCTCCCAGTTGGATTCTATATGGGCAGAGCAGCAAGGGCAAGAAGTAATATACCAGTGGGTAGATTGGTTACAAAGTTCTTCTCTTACTCACCTGGGATTTGATAAGGAAATTATACTTGGTCGGAATGGCGTGAATTGTGTTGGAGATGAGCGTGTTGTTTCAGGTTCCATATCCCTTGATGCTGCTATTCCTTTCTTGCGAGGTTACAATAAAGAGCGGCATAATGAGAACTTCCTCAAAGAATTACATGAGTGTAGCATTTGCTTTAGTGAATATCCAGGTACCGAGTTTGTCCGGTTACCATGTCAGCATTTCTTTTGCTTGAAATGCTTGCAGACCTTCACTCAGATGCATGTAAAAGAAGGCACCATTAGTAATCTTCAATGTCCTGATTCAAAATGTAAGGTTATGATTCCACCTGGCCTTTTGAAACACTTGCTTGGTGATGAAGAGTATGAGCGCTGGGAATCCATGATGCTGGAGAGAACACTTGCATCAATGTCTGATGTTGTTTATTGCCCAAGGTGTGAAACACCTTGCATAGAGGATGAAGATCAGCATGCTCAATGCTCAAAATGCTTTTTTAGCTTTTGTACTCTTTGTCGGGAACGACGCCATGTTGGCATAGCATGCATGACACTAGATATGAAACTTCAAATTTTGCAGGTATGATATTTGGAATGTTCTAATCATGGTTTTTTCCAACAATGATCTTAAAATCAAACAGTAGTTATAGTTTTCAAAGAAATTCATCGAGATTCCAAGTTGTGCCCTTCTTGTAGCATGGCAATCAACCGAACCGAAGGTTGTAACAAAATGAAGTGCAGTAACTGTGGAGCATACTTTTGTTACCGCTGCAACAAATTAATTGATCCATCAGACCCATATGGGCATTTCAGGGATGGATCCTGTGAATTGTTCCCACAAGAAATGATTGAGAACTGGCAAGAGCGCATTAACCATCGCCAGGTCGTAGGGCAACTACAGGCTGAACTCTTTCGGGAACGCGGCCTGCCCTGTCCTAACTGTCGTCAGTTCAATGCAAAGGTTGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTGTGCAACGAAATTGTGAGGCGCGGGTCTAAGCATTATGGTCCAAAGGGCTGCAAACAGCACACTGAGGGGTAA 1698 0.4246 MSTRKTRGGRNHRNHHRTPHHDDDDDSFTPKPLHQQHHHQQQHSTPPTHHRRGHHNHYQQPKLRFVKKSELDSSASDSLLTSDPVAVPAADHVTPLPHENHKEEENNNNNNISVSDAVTVTREVDHKACSSNSKEVDDDDADDYVVNRLRRLLDAVEEPALMEEQLSTNDQLQEDELLVVESIYGENVNKLESWKGLRCFQIQIHIEVLGEIAIIAKLNSSNELDVASGNSDDFFYSFKVQYLPPIVLTCLLPKSYPSHQPPLFTVSVQWLESLDILSLCSQLDSIWAEQQGQEVIYQWVDWLQSSSLTHLGFDKEIILGRNGVNCVGDERVVSGSISLDAAIPFLRGYNKERHNENFLKELHECSICFSEYPGTEFVRLPCQHFFCLKCLQTFTQMHVKEGTISNLQCPDSKCKVMIPPGLLKHLLGDEEYERWESMMLERTLASMSDVVYCPRCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIACMTLDMKLQILQVXYLECSNHGFFQQXSXNQTVVIVFKEIHRDSKLCPSCSMAINRTEGCNKMKCSNCGAYFCYRCNKLIDPSDPYGHFRDGSCELFPQEMIENWQERINHRQVVGQLQAELFRERGLPCPNCRQFNAKVGNNNHMFCWACQSHYCYLCNEIVRRGSKHYGPKGCKQHTEG 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00143 671 Gene3D - 515 609 - -
Arst5g00143 671 SUPERFAMILY RING/U-box 612 668 - -
Arst5g00143 671 ProSiteProfiles Zinc finger RING-type profile. 365 413 IPR001841 -
Arst5g00143 671 CDD BRcat_RBR_RNF14 444 495 - -
Arst5g00143 671 MobiDBLite consensus disorder prediction 120 139 - -
Arst5g00143 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 448 IPR013083 -
Arst5g00143 671 MobiDBLite consensus disorder prediction 43 62 - -
Arst5g00143 671 FunFam RBR-type E3 ubiquitin transferase 360 444 - -
Arst5g00143 671 CDD RING-HC_ITT1-like 359 418 - -
Arst5g00143 671 SUPERFAMILY RING/U-box 524 579 - -
Arst5g00143 671 CDD Rcat_RBR_RNF14 534 587 IPR047548 GO:0008270
Arst5g00143 671 Pfam IBR domain, a half RING-finger domain 433 491 IPR002867 GO:0008270
Arst5g00143 671 Pfam IBR domain, a half RING-finger domain 529 569 IPR002867 GO:0008270
Arst5g00143 671 ProSitePatterns Zinc finger RING-type signature. 382 391 IPR017907 -
Arst5g00143 671 SMART RWD2001b 175 310 IPR006575 GO:0005515
Arst5g00143 671 Pfam RWD domain 171 306 IPR006575 GO:0005515
Arst5g00143 671 MobiDBLite consensus disorder prediction 17 33 - -
Arst5g00143 671 ProSiteProfiles TRIAD supradomain profile. 361 589 IPR044066 -
Arst5g00143 671 ProSiteProfiles RWD domain profile. 175 310 IPR006575 GO:0005515
Arst5g00143 671 SUPERFAMILY RING/U-box 433 496 - -
Arst5g00143 671 Pfam zinc-RING finger domain 364 411 IPR001841 -
Arst5g00143 671 SUPERFAMILY UBC-like 166 305 IPR016135 -
Arst5g00143 671 SMART ring_2 620 649 IPR001841 -
Arst5g00143 671 SMART ring_2 365 412 IPR001841 -
Arst5g00143 671 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 193 579 IPR031127 GO:0004842|GO:0016567
Arst5g00143 671 MobiDBLite consensus disorder prediction 1 139 - -
Arst5g00143 671 SUPERFAMILY RING/U-box 360 445 - -
Arst5g00143 671 MobiDBLite consensus disorder prediction 1 16 - -
Arst5g00143 671 Gene3D Ubiquitin Conjugating Enzyme 161 312 IPR016135 -
Arst5g00143 671 SMART ibrneu5 433 491 IPR002867 GO:0008270
Arst5g00143 671 SMART ibrneu5 525 584 IPR002867 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00143 360 592 ARIADNE family AT3G27710 23.237 3.92e-15 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00143 5 1259515 1262883 Arst5g00143 5 1259515 1262883 ECH