Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00140 ATGGGAAGGTCACCATGCTGTGATGAGAGTAGCGGTAATGTAAAGAAAGGGCCATGGACACCAGAAGAGGATGAGAAGCTGATTGATTACATAAAGAAACACGGTCATGGAAGTTGGAGAACTCTTTCAAAGCGTGCTGGTCTCAACAGATGCGGTAAGAGCTGCCGACTCAGGTGGGCTAACTACCTTCGTCCCGATATCAAGAGAGGCAAATTCACCCCAGACGAGGAGAGGATCATCGTCAACCTTCATTCTCTTCTTGGAAACAAGTGGTCAAAGATTGCAAGCCATCTTCCTGGAAGAACTGATAACGAGATAAAGAATTTCTGGAACACTCACATAAGGAAGAAGCTTCTGCAGATGGGTATTGATCCAGACACACACAAGCCAAGGACTGATTTCAATCACCTCATCAATCTCACACACTTGCTTGCAGCAGCCATGTCCTCCAATTCAGGGAATCCTATGATGAATATGAACACTCCTACTTGGGGGAGAAACCCTAATATTGCTCTACAAGGAGATGTTACTTCTCAATTATCCCAACTACATCTGTTGCAAAATCTGTTGCAAATTATGAACAGCAACACATTTGTTAATCTGGGGAATAACCCTAATTTCCCCTTAGGAAACCCCAGCTTCAATAATTCTTATCTTAACGGGTCAAACATCCTTCAAACTGTAGAACCTTTTGCTGGATTGAAAAGTGAAGAATATGGATCACAATCAAACCCTACTACTGGTCTATTATCTCAATCAGACTACAGTAGTGACTTCTTTCAACATGGATTGTCAACAAATACACAAGAGCTTGAATGCTATAACAAACTCAGCAACACTACTAATCAAGCAGAGATTAATCCACTGTTTCCTGCATTAGTAGCATCCTCTCCAGTAATTACTGATGGAACCTGCAGCAGCTTCAACCAGATGGAGAATAAGAATAGTAGCTGTTGCAACACAGCTCCAACATCCACAGCACAGTCACCTAATAATAATTCCAACACAATCTTTGATGATTTGGAGAAGCTCCTTCAGGATGATGAAACATCTGCCTCCTACTGGAAAGATATTCTAGACTTGACATCAATATGTGCCTCAGAGAATTCGTGGTAG 1116 0.4194 MGRSPCCDESSGNVKKGPWTPEEDEKLIDYIKKHGHGSWRTLSKRAGLNRCGKSCRLRWANYLRPDIKRGKFTPDEERIIVNLHSLLGNKWSKIASHLPGRTDNEIKNFWNTHIRKKLLQMGIDPDTHKPRTDFNHLINLTHLLAAAMSSNSGNPMMNMNTPTWGRNPNIALQGDVTSQLSQLHLLQNLLQIMNSNTFVNLGNNPNFPLGNPSFNNSYLNGSNILQTVEPFAGLKSEEYGSQSNPTTGLLSQSDYSSDFFQHGLSTNTQELECYNKLSNTTNQAEINPLFPALVASSPVITDGTCSSFNQMENKNSSCCNTAPTSTAQSPNNNSNTIFDDLEKLLQDDETSASYWKDILDLTSICASENSW 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00140 371 FunFam MYB-related transcription factor 15 68 - -
Arst5g00140 371 Gene3D - 15 68 - -
Arst5g00140 371 Gene3D - 71 118 - -
Arst5g00140 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Arst5g00140 371 FunFam Transcription factor MYB39 71 132 - -
Arst5g00140 371 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Arst5g00140 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 63 IPR017930 -
Arst5g00140 371 CDD SANT 71 114 IPR001005 -
Arst5g00140 371 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Arst5g00140 371 CDD SANT 18 63 IPR001005 -
Arst5g00140 371 SMART sant 68 116 IPR001005 -
Arst5g00140 371 SMART sant 15 65 IPR001005 -
Arst5g00140 371 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Arst5g00140 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 306 - -
Arst5g00140 371 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Arst5g00140 371 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00140 Arst-Chr5 1206529 1208592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00140 1 360 MYB Transcription Factor Family AT5G16770 43.669 9.16e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst5g00140 Myb_DNA-binding 5.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00140 K09422 - gmx:100810159 390.578