Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00136 ATGGGAAAAAAGAAACCAAAGGACCCTCCACAAACCGACTTAGCTTCGCCCCGTCCCGCCGCCGGCATTTTCTCCTCGCTCTTTGCCGCCGCACCGGAACCAAGCACCGCCCTCGCTTCCTTATTCTCCGACGACAACCCCTTTCGGAGAAAGCCCACTCAACCTTCTCAGGAATCAAACGAACAAACTCAAATCCCTAACAATGTCGGATCCGCACAACACGACACCGGCGAGGAGAAGAGGAAAAGGAAAACCTTAGAGGAGAAGCCCTCCGCCGATTCCGCAATCGAAGCTTCGGGGAAGAAGAGGAAGTACCACGAGTCAATTGAAGAGGCCAAAGGCTCTGACTTGGCAATTGAAAAGAACGATGAGGGGAAGGAGAAGAAGAAGAAGAAGAGGAAAAGAGAGGAGCTTGAGAAGGAGTGGGAGGAGAGGAAGTATGGTGCGGTGGTGGATGAAGAAAAAGAAGCGTCTTTGTTGGAGAACGGAAAAGTTGGGAACAAGAGGAAGTTGCTGCATAACCCTGCTGATATGATGGTATCGAAGGAAGGGTTTGATGATGAGGAGAAGCTCTTGAGAACGGTATTCGTTGGAAATTTGCCTCTCAAGGTGAAGAAGAAGACCCTGCTCAAAGAGTTCAAGAAGTTCGGTGAGGTTGAATCCGTGAGGATTCGTTCTGTTCCGATACAAGACACTAAAAAGCCTAGGAAGGGTGCTATCCTTGCGAAGAAAATCAATGATGCTGCTGATAGTGTTCATGCCTACATTGTTTTCAAAACGGAAGAATCTGCTCAGGCATCTTTGTCCCACAACATGGCAGTGGTTGAAGGGAATCATATTCGTGTTGATAGGGCATGCCCGCCCCGCAAGAAACTTAAAGGGGAGAGTACTCCACTTTATGATAACAAGAGAACTTTGTTTGTGGGCAACCTTCCATTTGATGTGAAGGATGAAGAATTATATCAGTTATTTTGTAGCATACCTAACCTGGGAACCAGTGTAGAAGCTGTAAGAGTTGTTAGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACAAAGGAAGCTGCTAATTCTGCACTCAAGAAACGGAACCTGAAGCTTCGAGACCGAGAATTACGACTCAGTCATGCCAAGGCTGATTCCACTCCATCGAAAAAGCCAAAGCCAAAGCCAAAGCCATCACCAGCACAAGCTCCTGGCACCCCGGCCAAGAGAAAGTCTCTGGCTATGACGTCTCCTTCAAGCAGCATCAACAGGTCAAACAAAAAATTCAATGCATCTTACCAGGGTTTGCGTGCAACAAAATCTGATTTCAAGAAGAAAGCTCATGGAGTAGAAAAATCAAAAGGACGCTCGGAGAAACGACCATCAGTTGCTGCCAGAAAAGCCAAAGCAAAAATGCTCAAAGAAAGTGGTTCATCAAAACAAGCTGGGATGAAACGCAAGCTTGATAGTCGTACTCCAGATAGCTCCTTCAGAAATAAGAAGGTGAAGAAGAATAGGTAG 1524 0.4646 MGKKKPKDPPQTDLASPRPAAGIFSSLFAAAPEPSTALASLFSDDNPFRRKPTQPSQESNEQTQIPNNVGSAQHDTGEEKRKRKTLEEKPSADSAIEASGKKRKYHESIEEAKGSDLAIEKNDEGKEKKKKKRKREELEKEWEERKYGAVVDEEKEASLLENGKVGNKRKLLHNPADMMVSKEGFDDEEKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEESAQASLSHNMAVVEGNHIRVDRACPPRKKLKGESTPLYDNKRTLFVGNLPFDVKDEELYQLFCSIPNLGTSVEAVRVVRDPHLNVGKGIAYVLFKTKEAANSALKKRNLKLRDRELRLSHAKADSTPSKKPKPKPKPSPAQAPGTPAKRKSLAMTSPSSSINRSNKKFNASYQGLRATKSDFKKKAHGVEKSKGRSEKRPSVAARKAKAKMLKESGSSKQAGMKRKLDSRTPDSSFRNKKVKKNR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00136 507 MobiDBLite consensus disorder prediction 440 501 - -
Arst5g00136 507 MobiDBLite consensus disorder prediction 375 507 - -
Arst5g00136 507 SMART rrm1_1 305 381 IPR000504 GO:0003723
Arst5g00136 507 SMART rrm1_1 194 283 IPR000504 GO:0003723
Arst5g00136 507 CDD RRM2_RBM34 305 381 IPR034221 -
Arst5g00136 507 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 284 470 - -
Arst5g00136 507 MobiDBLite consensus disorder prediction 1 20 - -
Arst5g00136 507 Coils Coil 121 146 - -
Arst5g00136 507 Gene3D - 295 393 IPR012677 -
Arst5g00136 507 MobiDBLite consensus disorder prediction 413 438 - -
Arst5g00136 507 MobiDBLite consensus disorder prediction 39 73 - -
Arst5g00136 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 385 IPR000504 GO:0003723
Arst5g00136 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 287 IPR000504 GO:0003723
Arst5g00136 507 MobiDBLite consensus disorder prediction 375 393 - -
Arst5g00136 507 Gene3D - 188 292 IPR012677 -
Arst5g00136 507 MobiDBLite consensus disorder prediction 74 139 - -
Arst5g00136 507 MobiDBLite consensus disorder prediction 38 139 - -
Arst5g00136 507 SUPERFAMILY RNA-binding domain, RBD 185 293 IPR035979 GO:0003676
Arst5g00136 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 237 IPR000504 GO:0003723
Arst5g00136 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 378 IPR000504 GO:0003723
Arst5g00136 507 SUPERFAMILY RNA-binding domain, RBD 303 446 IPR035979 GO:0003676
Arst5g00136 507 CDD RRM1_RBM34 193 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00136 Arst-Chr5 1154227 1157280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00136 195 384 Eukaryotic Initiation Factors Gene Family AT1G22760 26.768 5.32e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00136 K14837 - gmx:100809622 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00136 5 1154227 1157280 Arst5g00136 5 1154227 1157280 ECH