Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00132 ATGGGCCTCGACGCTTCCCTCCTCCACGAATTCCCCACCTTCCCTTATTCCTCCGTCAAGGATCTCCGTAAGGAGAAGAAGTACGCCCTTGAATGCGCCATCTGTCTCTTGGAGTTCGAGGACGACACCGTTCTCCGCTTGCTCCCCGTTTGCCGCCACGTGTTCCACCAAGAGTGCGTTGATCTCTGGCTTCAACGACACAAGACCTGCCCCGTTTGCCGCACTGATCTTGAAACCAGAAAGTCTTCTGCTTCTTCGATTACTCACGATCATGACAGGCAGAGTGCTGCTGTTGGAGGAGACGACGGTAATGGTGATGATGACGTCTGCATTGACGTCAAAGAAGGCGGCGACGACGACGACGGTAATAACAGATTCTTGCGGTCGCATTCGACGGGGCATTCAATAGTTATGGTTAGAGAAGAAGGAAGAAACGACGAAGATGATGATAGGTATAGGTTGAGGTTGCAGGAGGATGCAGAGTTGAGAATTGTTAACAATGATATGAAGAAGAAGAAGAATCACCAATACTCGAGAAGCTGCGAGAGTTACAAGGAGATGATGATGATGATGGCGGCGGCAAAGCCCCTTGTTCCGCCTTGTACTAACTGTGGTTATGTTGATCATCACACTCTCTCTGTTCCTTCTTCTTCTTCGCGTGTTGGTGCAAATTGA 675 0.4978 MGLDASLLHEFPTFPYSSVKDLRKEKKYALECAICLLEFEDDTVLRLLPVCRHVFHQECVDLWLQRHKTCPVCRTDLETRKSSASSITHDHDRQSAAVGGDDGNGDDDVCIDVKEGGDDDDGNNRFLRSHSTGHSIVMVREEGRNDEDDDRYRLRLQEDAELRIVNNDMKKKKNHQYSRSCESYKEMMMMMAAAKPLVPPCTNCGYVDHHTLSVPSSSSRVGAN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00132 224 Pfam Ring finger domain 31 74 IPR001841 -
Arst5g00132 224 ProSiteProfiles Zinc finger RING-type profile. 32 74 IPR001841 -
Arst5g00132 224 SMART ring_2 32 73 IPR001841 -
Arst5g00132 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 80 IPR013083 -
Arst5g00132 224 MobiDBLite consensus disorder prediction 81 105 - -
Arst5g00132 224 FunFam E3 ubiquitin-protein ligase ATL6 1 80 - -
Arst5g00132 224 CDD RING-H2_EL5-like 31 74 - -
Arst5g00132 224 SUPERFAMILY RING/U-box 20 80 - -
Arst5g00132 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 2 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00132 Arst-Chr5 1125836 1126533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00132 2 174 Rapid Response to Elicitors AT3G05200 40.314 1.94e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00132 - - adu:107487019 447.588