Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00130 ATGGCATCTCTTGGCAACCCAAGAACTTGGGTTCCATATGTGAACAGCAAAGACTGTTCTCAAGGATTTTGCAGCTTGTACTGTCCACAGTGGTGTTATACAGTGTACCCTCCACCTCCTCCTCCTCCATTTGAATTCCCTGATGAAGATTCAGGTCCGAATTTCTCACCTCTTGTTATTGCAATCATTGGAGTGTTGGCAAGTGCTTTTCTCCTTGTGAGTTACTACACCATAATTTCCAAGTACTGTGGCAGAAGAGAATCATCCTCAGCAGAACATGAAGAAGAAGTAACAAATGTTGAGATTTTGGAAGACAACCACAACCCTTCACTCCATGAGCCATGGCATGCCTCAACAACTGGTCTAGATGAGGCACTCATCAAGACCATAACTGTTTGCAAGTACAGGAAAGGCGAAGGACTCGTTGAGGTAACGGATTGTTCCGTTTGCCTCAGCGAGTTCCAAGATGGCGAGAGCATTCGGCTCTTGCCAAAGTGTAGCCATGCTTTTCACATTCTTTGCATTGATACATGGCTCAAGTCTCACTCCAATTGCCCTCTTTGCCGCGCCACGCTTTTCACCTTCAATGCTGCAGTGCCATTTCATGCGCTGCCGCCGGCACCCCAGGTGTTGGAACTACCTTCTTCAGCAAGAAATGGAGGTTCTTCTGAGAATGTGGTTCATGTAGATGAAAATGTGGATAATGGAACAAGGGAGAGTGATGAGTTATTGGATGTGGTGTTGGACGAAGGTGCACTGAATGGTAACAGAGAAGTTCCAAAGACTAATAATGCATTCAGAGCTTTCAGTGACTTGGGGAATTTGAGGGGAAGGCATGCTGAGATTAGAGATGAGGATTACTATGAATCAATAAGAAGATCAGTGTCTATGGACCATTCCTTTCAAAATGGTGTTACACTTTCAGTAGCTGATGTTCTTCACATGAATCATGATCAAGATTCAAATGAAGAAGTTGGCACTTCAAAGAGATCATCATCATCAATGGGTGAAAGTAGCAAATCAAGCTATAGAAGAAGAGTGTTGCATTGTGTTCTGAGTCCAATTTCAATGAAGAGATCATTCTCAAGTGGAAGATTCTCTCTTAGTGGAAGAAATGGCAGGGGAAGGCAGGGGATTTTACCTTTATGA 1149 0.4378 MASLGNPRTWVPYVNSKDCSQGFCSLYCPQWCYTVYPPPPPPPFEFPDEDSGPNFSPLVIAIIGVLASAFLLVSYYTIISKYCGRRESSSAEHEEEVTNVEILEDNHNPSLHEPWHASTTGLDEALIKTITVCKYRKGEGLVEVTDCSVCLSEFQDGESIRLLPKCSHAFHILCIDTWLKSHSNCPLCRATLFTFNAAVPFHALPPAPQVLELPSSARNGGSSENVVHVDENVDNGTRESDELLDVVLDEGALNGNREVPKTNNAFRAFSDLGNLRGRHAEIRDEDYYESIRRSVSMDHSFQNGVTLSVADVLHMNHDQDSNEEVGTSKRSSSSMGESSKSSYRRRVLHCVLSPISMKRSFSSGRFSLSGRNGRGRQGILPL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00130 382 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Arst5g00130 382 MobiDBLite consensus disorder prediction 363 382 - -
Arst5g00130 382 SUPERFAMILY RING/U-box 146 195 - -
Arst5g00130 382 PANTHER RING-H2 FINGER PROTEIN ATL16 43 341 IPR044600 GO:0016567|GO:0016740
Arst5g00130 382 SMART ring_2 147 188 IPR001841 -
Arst5g00130 382 Pfam Ring finger domain 146 189 IPR001841 -
Arst5g00130 382 FunFam RING-H2 finger protein ATL54 122 195 - -
Arst5g00130 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 195 IPR013083 -
Arst5g00130 382 MobiDBLite consensus disorder prediction 326 341 - -
Arst5g00130 382 CDD RING-H2_EL5-like 146 189 - -
Arst5g00130 382 MobiDBLite consensus disorder prediction 317 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00130 Arst-Chr5 1112969 1114570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00130 1 339 C3H Transcription Factor Family AT3G03550 41.595 2.13e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00130 - - adu:107487194 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00130 5 1112969 1114570 Arst5g00130 5 1112969 1114570 ECH