Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00129 ATGGCAGCAACATTAGAGTCAGCACTCTCCATATTTGCATCTCACTCTCACCGTTTCTCCAACAACAACACTCGTCTCTCTCCAAACCTCTCTTCTCTCTCCTTCTCTTTCAATGCCTCCACACCAAGATCATTCTCCTTCCTCTGCTCCACATTGCAAGAAGCACAACCACACACACCTACAACTCAGGAACAACCCAAGAACGTGAAGAAGAAGCTCTATGTCTTCAACTTACCTTGGTCTATGTCCGTTGCTGACATCAAAGACCTGTTTAGCCAATGCGGAACTGTAACAGACGTCGAGATCATAAAGAACAAACAAGGCAAGAGCAGGGGTTTTGCCTTCGTTACTATGGCTTCAGGGGAAGAGGCTCTGGCTGTCGTTCACAAGTTCAATTCTCATCAAATATCAGGAAGGGAAATAAGGATAGAGCTTGCCAAGAGATTCAAGAAGCCGCCGCCTCCTCCTCCACCGTCTCCGAGTCCCCCTGCCGGCGAGACACGTCACGTGGTATATGTAGCCAACCTTGCATGGAAAGTAAGATCACCCGTTCTCAGACAATTCTTCACTGATAATTTCAAAACCCCAGTTTCGTCCAGGGTTGTCTTTGAGAGCCCTGCCGGAAGATCTGCAGGGTATGGATTTGTTTCTTTCCTCACAAAAGAGGATGCAGAGGCTGCAATTTCTGCTTTGGATGGGAAGGAATTAATGGAGCGACCACTTCGTCTTAAGTTGAGTGAAAAGAAAGTCAAAGCAGCTCCAACTGAAAGGGATGAAGACCAAGCTCCTGAATTGGTGGATCAAGAGAAGCTCAAAGAAGCTGAAACTGAAAAGGAGGAAATCCATGATTCTGATGCTCAGCTGGAACAATCATAA 876 0.4658 MAATLESALSIFASHSHRFSNNNTRLSPNLSSLSFSFNASTPRSFSFLCSTLQEAQPHTPTTQEQPKNVKKKLYVFNLPWSMSVADIKDLFSQCGTVTDVEIIKNKQGKSRGFAFVTMASGEEALAVVHKFNSHQISGREIRIELAKRFKKPPPPPPPSPSPPAGETRHVVYVANLAWKVRSPVLRQFFTDNFKTPVSSRVVFESPAGRSAGYGFVSFLTKEDAEAAISALDGKELMERPLRLKLSEKKVKAAPTERDEDQAPELVDQEKLKEAETEKEEIHDSDAQLEQS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00129 291 SUPERFAMILY RNA-binding domain, RBD 55 152 IPR035979 GO:0003676
Arst5g00129 291 CDD RRM_SF 73 144 - -
Arst5g00129 291 SMART rrm1_1 72 144 IPR000504 GO:0003723
Arst5g00129 291 SMART rrm1_1 170 244 IPR000504 GO:0003723
Arst5g00129 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 148 IPR000504 GO:0003723
Arst5g00129 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 248 IPR000504 GO:0003723
Arst5g00129 291 Gene3D - 152 258 IPR012677 -
Arst5g00129 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Arst5g00129 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 242 IPR000504 GO:0003723
Arst5g00129 291 SUPERFAMILY RNA-binding domain, RBD 152 252 IPR035979 GO:0003676
Arst5g00129 291 Coils Coil 271 291 - -
Arst5g00129 291 PANTHER OS02G0815200 PROTEIN 16 249 - -
Arst5g00129 291 MobiDBLite consensus disorder prediction 246 291 - -
Arst5g00129 291 Gene3D - 50 151 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00129 Arst-Chr5 1105521 1107688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00129 73 261 Eukaryotic Initiation Factors Gene Family AT4G34110 26.316 5.58e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00129 - - gmx:100793319 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00129 5 1105521 1107688 Arst5g00129 5 1105521 1107688 ECH