Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00117 ATGAACCTCTGGACAGACGACAACTCCTCCGTTATGGAGGCCTTCATGACCTCCTCCGACCTCTCTTCCCTCTGGCCTCCGCCACCTCCTCCCCCTCAATCCGCCTCCTCTGCCGCCGTATTTAATCAGGATACCCTCCAGCAGCGCCTCCAGGCTCTCATCGAAGGGGCTAGGGAGAGCTGGACATATGCTATTTTCTGGCAGTCTTCCTATGACTACCCCTCCTCCGCCTCCACCGCCGTCCTCGGCTGGGGCGACGGCTATTACAAGGGCGATGAAGACAAGGGAAAGGCCAAATCCACCAAAACCACCACCCCCGCCGAGCAGGATCACCGTAAAAAGGTCCTCCGCGAGCTCAATTCCCTGATTTCCGGCTCCGCTGCCGCCCCCTCCGACGATGTCGAAGAGGAAGTCACCGACACCGAGTGGTTCTTCCTAGTCTCCATGACGCAGTCCTTTGTAAGCGGGACGGGGCTCCCCGGCCAAGCTTTCTACCACTCGAGCCCGGTCTGGCTCACAGGCCCGGACAGACTCGCCGGTTCGTCGTGCGAGCGGGCCAGACAAGGCCAGGTATTCGGGCTCCAAACCCTGGTTTGCATACCTTCCTCAAACGGGGTGGTTGAGCTTGGCTCCACGGAGATGATCTTCCAAAATCCCGATCTGATGAACAAGGTTAGGATTCTCTTCAATTTCAATAGCAACAGCATCGACGTGGGCTCATCGTGGCCGTTAACCGGCAGCACAACTACCACAGCCGCCGATCAAGGTGAGAACGATCCTTCTTCATTATGGCTTAACGACTCTGAAATTAGGGATTCTGTTACCACCGTTACTACCGTCACAACGACCACTCCTGCCTCGGTTATTTCCGTTAACCCTGGTTCGAGCGCCTTGGCAGAAACCCCAAGCTCCGTTCACTTGCCGAATAATAACAACAACACGCACGCTGGTGGCGCGTCTCAATCGCAGAACCGGAGCTTCTTCTCAAGGGAGTTGAACTTTTCGGAGTTTGGATTTGACGGTAGTAACGCCGTCAAAACGGGGAACGGTCAGCATCACTCGCTCAAGCCGGAATCTGGTGAGATTCTGAGCTTCGGCGAGAGCAAGAGGAGCTCGTATGGCGGAGGTGGAGGCGGAGGCGGAGGAGGTGGAAACGCGAACTTCTTCTCCGGCCAGTCGCAGTTCGTTGCCGCAGCCGAGGACAACAACGGGAAAAAGAGGAAGTCACCGAATTCGAGAGGAAGCAACAACGACGACGGCATGCTCTCTTTCACATCCGGTGTGATTCTTCCGCCGTCGAACATGAAATCCAGTGGCGGAGGCGGTGATTCCGACCACTCAGACCTGGAGGCCTCGGTGGTGAAGGAGAACGAAAGCAGCAGAGTGGTGGAGCCGGAGAAGCGGCCAAGAAAAAGAGGGCGGAAGCCGGCGAATGGCAGAGAGGAACCGTTGAACCACGTGGAAGCGGAGAGGCAGAGAAGGGAGAAGCTCAACCAGCGATTCTACGCCCTCCGTGCCGTAGTTCCAAACGTTTCAAAGATGGACAAAGCTTCACTCCTTGGCGACGCCATTTCCTACATCACAGAGCTCAAATCAAAGCTTCAAACCCTCGAATCAGACAAAGATGGCTTAGAGAAGCAGCTTGATTCACTGAAGAAGGATCTTGATAATGTCAAAAAGGAAGCTTCTTCAGCTCCTCCTCCTCTTCCAGACAAGGAACTAAGGATGTCCTCCAACAACCTTGTAGGTGGTGGGAAGCTTATTGATTTGGATATAGACGTGAAGATAATTGGCTGGGATGCAATGATAAGAATCCAATGCAGCAAGAAGAACCACCCTGCCGCGAGATTGATGGCAGCCCTGATGGAGCTGGACTTGGACGTCCACCACGCCAGCGTGTCTGTGGTGAATGATTTGATGATACAACAGGCAACAGTGAAGATGGGTAGCCGGTTTTACACGCAGGAGCAGCTCCGGTCGGCGCTAACATCCAAAGTTGGTGGTGATGTACGGTAG 2016 0.5486 MNLWTDDNSSVMEAFMTSSDLSSLWPPPPPPPQSASSAAVFNQDTLQQRLQALIEGARESWTYAIFWQSSYDYPSSASTAVLGWGDGYYKGDEDKGKAKSTKTTTPAEQDHRKKVLRELNSLISGSAAAPSDDVEEEVTDTEWFFLVSMTQSFVSGTGLPGQAFYHSSPVWLTGPDRLAGSSCERARQGQVFGLQTLVCIPSSNGVVELGSTEMIFQNPDLMNKVRILFNFNSNSIDVGSSWPLTGSTTTTAADQGENDPSSLWLNDSEIRDSVTTVTTVTTTTPASVISVNPGSSALAETPSSVHLPNNNNNTHAGGASQSQNRSFFSRELNFSEFGFDGSNAVKTGNGQHHSLKPESGEILSFGESKRSSYGGGGGGGGGGGNANFFSGQSQFVAAAEDNNGKKRKSPNSRGSNNDDGMLSFTSGVILPPSNMKSSGGGGDSDHSDLEASVVKENESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGLEKQLDSLKKDLDNVKKEASSAPPPLPDKELRMSSNNLVGGGKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALTSKVGGDVR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00117 671 FunFam Transcription factor bHLH13 474 548 - -
Arst5g00117 671 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 481 530 IPR011598 GO:0046983
Arst5g00117 671 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 484 551 IPR036638 GO:0046983
Arst5g00117 671 Coils Coil 527 561 - -
Arst5g00117 671 CDD bHLH_AtAIB_like 478 553 - -
Arst5g00117 671 Gene3D - 473 563 IPR036638 GO:0046983
Arst5g00117 671 MobiDBLite consensus disorder prediction 287 324 - -
Arst5g00117 671 Pfam Helix-loop-helix DNA-binding domain 485 530 IPR011598 GO:0046983
Arst5g00117 671 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 46 229 IPR025610 -
Arst5g00117 671 MobiDBLite consensus disorder prediction 414 441 - -
Arst5g00117 671 MobiDBLite consensus disorder prediction 366 491 - -
Arst5g00117 671 MobiDBLite consensus disorder prediction 448 491 - -
Arst5g00117 671 SMART finulus 487 536 IPR011598 GO:0046983
Arst5g00117 671 PANTHER MYC 13 665 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00117 Arst-Chr5 958203 960817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00117 1 667 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.201 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g00117 bHLH-MYC_N 1.9e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00117 K13422 - gmx:100776289 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00117 5 958203 960817 Arst5g00117 5 958203 960817 ECH