Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00096 ATGTCTCCGCGGGCGCTGGCTCTGGTTTCAGAGGACGAAGGACAGAGCAAAGTCTCGACGGTAGCTTCTGCATCTTCACAATCCCTGGACTGTTTCTCCCAAAGTGGGGGTAGAGGATTGAAAGAGCGAAATTACCTTGGGTTGTCTGATTGCTCATCAGTGGACAGCTCCAATTCTGCTGTCCCAAGCTTGTCTGATGAGAAGAAGGGCAACCTGAATTTGAAGGCTACTGAATTGAGGCTGGGACTCCCTGGATCCCAGTCGCCTGAACGGCATCCGGATGTAGATGTGTTCTCTTTGAGCTCATCGAAGCCCGATGAGAAGCCGTTGTTCCCTTTGCTTCCAATGAAAGATGGTATCTGCTCGTCGTCCCAGAAGAATGTTGCTGTGTTGGGAAACAAAAGGGGTTTTGCTGATACCATAGATGGATTTTCTCAGGGGAAGTTTGCTGGTAATACAGCAATAAGTGCAATGTTATCACCTAGATCTTCTGGTCTACAGCCTACTGCGACGAAGGAAATGCCAAAGGTGTTACAAGAACAGCCATGTGCAGCTAATGGAACTGGTCTAAATAGCCATACGGGTCCTTCTGCCAGTGCCAGTGCCCCAGCTTCTAAGGCGCAGGTCGTTGGTTGGCCTCCTATAAGATCATTTAGGAGAAATTCAATGGCAACCGCATCAAAGAACAATGATGAAGTGGATGGAAAACCTGGTTTGGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTCAGGAAGGTGGATCTCAGAAGTTATGCATCCTATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCACTTGTTTTACCCTAGGTCAGTGTGGCTCCCATGGATCTCCAGGAAGAGAAATGTTGAGTGAAAGCAAGCTGAGGGACCTTCTGCATGGTTCAGAGTATGTCCTCACTTACGAGGATAAAGATGGGGATTGGATGCTTGTAGGGGACGTACCTTGGGAGATGTTCATAGACACTTGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGTTTAGCTCCCAGGGCCATGGAGAAGTCCAAGAGCAGGTGTTAG 1086 0.4843 MSPRALALVSEDEGQSKVSTVASASSQSLDCFSQSGGRGLKERNYLGLSDCSSVDSSNSAVPSLSDEKKGNLNLKATELRLGLPGSQSPERHPDVDVFSLSSSKPDEKPLFPLLPMKDGICSSSQKNVAVLGNKRGFADTIDGFSQGKFAGNTAISAMLSPRSSGLQPTATKEMPKVLQEQPCAANGTGLNSHTGPSASASAPASKAQVVGWPPIRSFRRNSMATASKNNDEVDGKPGLAALFVKVSMDGAPYLRKVDLRSYASYQELSSALEKMFTCFTLGQCGSHGSPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRC 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00096 361 MobiDBLite consensus disorder prediction 184 204 - -
Arst5g00096 361 Gene3D - 238 354 - -
Arst5g00096 361 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 72 348 IPR003311 GO:0005634|GO:0006355
Arst5g00096 361 MobiDBLite consensus disorder prediction 1 36 - -
Arst5g00096 361 MobiDBLite consensus disorder prediction 13 34 - -
Arst5g00096 361 FunFam Auxin-responsive protein 236 353 - -
Arst5g00096 361 SUPERFAMILY CAD & PB1 domains 241 342 - -
Arst5g00096 361 MobiDBLite consensus disorder prediction 184 206 - -
Arst5g00096 361 ProSiteProfiles PB1 domain profile. 241 345 IPR000270 GO:0005515
Arst5g00096 361 Pfam AUX/IAA family 77 352 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00096 Arst-Chr5 804646 807967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00096 243 346 B3 DNA Binding Superfamily AT5G37020 33.654 3.18e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Arst5g00096 AUX_IAA 4.6e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00096 K14484 - gmx:547502 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00096 5 804646 807967 Arst5g00096 5 804646 807967 ECH