Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00094 ATGGAGCTTTCTCAACTTGGTTTTCTGGAGGAACTACTACTACTGGCTCCAAGGAGAGTAGAAGAAACATGTTGGAATAATGGTTTCAATGATCTACTCCCTACTACACCTCCTCCTTCTGCTTCTGTTTCTGCTTCTTGGAGCTTTGACTCTCTTGATGATAACCCTTCTTTGAATCCCTCATTTTCTTCATTCTCTACACCTTTAGACCACAGATTTGACTCTTCTTATGCTGCTTCATTTCCATTTCTTGATGCCTTCACAATCCCACCAGAGCTTCATCACTCACCACCGCCACTTTTGCCACAACAAGAACACAACCACAACAACCACCACCCTTTGGTGGAAGAAGAAGAAGAAGAGCTTGGATTTCTTGGTAATGATGATAACAATCAGAGCTTGGAAGAGAGGAACAGTGGTAGATGCAAAGTTGAGGAACAACAAGCTCTTGAGGTGCCAGCTGTAGTGTTCAACATGGGAATGTGTGGAGAGAAAAAGGTACCAAAGTCAAAGAAACTTGAAGGGCAGCCCTCAAAGAATCTCATGGCTGAAAGGAGAAGAAGAAAGCGTTTGAATGATCGCCTTTCAATGCTGAGGTCCATAGTCCCTAAGATAAGCAAGATGGACAGGACCTCCATTCTAGGAGATACCATAGATTACATGAAAGAGCTTCTAGAAAGGATTGCTAAGTTGCAAGAGGAAACAATGGAAGAGGAGGGAAAGAATCAGATACACCTCTTGGGAATTTCAAAAGAGCTAAAGCCAAATGAAGTAATGTTCAGAAACTCCCCTAAGTTTGATGTTGAGAGGAGGGACCATGACACAAGGATCAGCATCTGCTGTGCTACAAAGCCAGGGTTGTTGCTGTCAACAGTGAACACTCTAGAAGCATTAGGCCTTGAAATTCACCAATGTGTCATAAGCGGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGTCGCTGAGGAAAGAAACTGTATTAGCACAGAAGATGTTAAGCAAGCACTATTCAAAAATGCAGGCTATGGTGGAAGATGTGTCTAA 1050 0.4276 MELSQLGFLEELLLLAPRRVEETCWNNGFNDLLPTTPPPSASVSASWSFDSLDDNPSLNPSFSSFSTPLDHRFDSSYAASFPFLDAFTIPPELHHSPPPLLPQQEHNHNNHHPLVEEEEEELGFLGNDDNNQSLEERNSGRCKVEEQQALEVPAVVFNMGMCGEKKVPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIAKLQEETMEEEGKNQIHLLGISKELKPNEVMFRNSPKFDVERRDHDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISGFNDFSMQASCSEVAEERNCISTEDVKQALFKNAGYGGRCV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00094 349 SMART finulus 181 230 IPR011598 GO:0046983
Arst5g00094 349 Pfam Helix-loop-helix DNA-binding domain 181 224 IPR011598 GO:0046983
Arst5g00094 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 239 IPR036638 GO:0046983
Arst5g00094 349 Gene3D - 169 242 IPR036638 GO:0046983
Arst5g00094 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Arst5g00094 349 Coils Coil 214 241 - -
Arst5g00094 349 MobiDBLite consensus disorder prediction 114 142 - -
Arst5g00094 349 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 85 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00094 Arst-Chr5 776569 778473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00094 66 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 52.281 6.22e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g00094 HLH 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00094 - - gmx:100806571 405.216