Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00088 ATGAAATTTAAGGTGGCTTCGACATGGACGAAGCTAGATCTACCTTCGTTTGGGGTGCCTGCCGATAAAAAACTTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGTGAGGCATACAGGCAGGTTCAGCCCAATCTGCATTCTGTTCTGCAAGGTCTCTTTGGTACCTGGTCAAAGATATTCCCTCCCTCTGTCCTAAGCAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAATCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTGGACCGATTCTTGGGGCACATGTCATTAAACCACAATCCTTGCAGCAGATGGAACACTCTAGTTCAATCATGGATAATGTTGGTGGTGATCGGTTGGATTCAACGGGAACTGTAGGTAATACAAGAGGAGGAGGATTGAATGAATGGCAGCAAAAGAGATTTTCTAGTGATAATTGGAACATATTTCAAACTTCCAAGACTTATAATCTTAATGATGAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTCACAAAAGCCGTGAAATTCCTAGTACTAAGCTTTTATTGGTGGAGCAGCCTGGCAGAAATGGTTTTGGGAGCAAGTTTCCATTGGCAAGATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAACATGTGAATCCAGGATTAGTAGACTGTAGTAGAAACAGCAGTTCTATGCAATCAAGTGTTAGATTCTCCAAGAAAAGGAAGTTATCTAATGATCCATCTAATCCTTCACAGTACCCCTTTACTATGGGGGCTGCTCCCCCTGCTGTCAATGCTCATGGCACTCGTCCTTCCGGCTTGAATACAGCATTTCCATTGCAAAAACGTCCTAATGTAGGTCATGGCCCAAATAAAACTCAGTTTATACATGACCAATTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAACACCTCAACTACAGTTTCTTCCACCTCAAATTCCATCTTCAACACAAATTAGTCATGGGAGCTCTTTGCAAGGACATGGTGCCTCAATAAGTACGCCCATCTCAAATCCATTACCTGATATGCTGGGCCAAAGTTTACATTTACATGGGGGAATCTTGCCACCTTTATGTTCAAGCCTCCCAACTGCTCCATCACAAATGATGTCTCATCCCCATGCCGATGCTTCAGTGACAAGTCAACCACCACCTACATATCTTGATTTGCTTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACTAATCCACCCACCGGACTGGATTTCATTGGGACGGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCAGGAGCTGTGGTCTCCGATTCAAAAGGCAAGATGAGCACAGTAGACATATGGATTGGCACGTGACTAGGAACCGAATGTCAAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCATGTGGCTGAGTGGTGCAGAGGCTTCGGGAAAGGAATCGATTCCAAGGTTGTTGGCTGCCGAGGAGACAGAGGAAATGAAAGATGAGGAAGAGTTAGGCGTTCCTGCTAAAAAGGATCAGAGTCGATGTGCACTATGTGGAGAGGGCTTCGATGAGTTTTACAGCTAG 1743 0.4395 MKFKVASTWTKLDLPSFGVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQGLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQSFANHLGAYDFRGPILGAHVIKPQSLQQMEHSSSIMDNVGGDRLDSTGTVGNTRGGGLNEWQQKRFSSDNWNIFQTSKTYNLNDEQRQSPRALIEAYGCHKSREIPSTKLLLVEQPGRNGFGSKFPLARWQDTEEEEFDWKHVNPGLVDCSRNSSSMQSSVRFSKKRKLSNDPSNPSQYPFTMGAAPPAVNAHGTRPSGLNTAFPLQKRPNVGHGPNKTQFIHDQLPNQPGPISSNLQNHGQTPQLQFLPPQIPSSTQISHGSSLQGHGASISTPISNPLPDMLGQSLHLHGGILPPLCSSLPTAPSQMMSHPHADASVTSQPPPTYLDLLSSLVNHGVISVTNPPTGLDFIGTEFDPDILKVRHEGVISALYGDLPRQCRSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMWLSGAEASGKESIPRLLAAEETEEMKDEEELGVPAKKDQSRCALCGEGFDEFYS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00088 580 MobiDBLite consensus disorder prediction 357 376 - -
Arst5g00088 580 MobiDBLite consensus disorder prediction 253 350 - -
Arst5g00088 580 Pfam CID domain 19 86 IPR006569 -
Arst5g00088 580 Gene3D - 7 95 IPR008942 -
Arst5g00088 580 SUPERFAMILY ENTH/VHS domain 19 94 IPR008942 -
Arst5g00088 580 SMART 558neu5 2 93 IPR006569 -
Arst5g00088 580 MobiDBLite consensus disorder prediction 323 350 - -
Arst5g00088 580 ProSitePatterns Zinc finger C2H2 type domain signature. 482 502 IPR013087 -
Arst5g00088 580 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 317 580 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Arst5g00088 580 ProSiteProfiles CID domain profile. 1 96 IPR006569 -
Arst5g00088 580 MobiDBLite consensus disorder prediction 253 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00088 Arst-Chr5 724566 730518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00088 421 580 C2H2 Transcription Factor Family AT4G04885 59.627 7.12e-59 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst5g00088 CID 1.1e-06 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00088 K14400 - aip:107640327 531.176