Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00081 ATGGGAAGAGGGAAGATTGTGATTCGGAGGATCGATAATTCGACGAGCAGGCAAGTTACTTTCTCGAAGAGGAGAAAGGGTTTGATCAAGAAAGCTAAGGAGCTTGCTATCCTCTGTGATGCAGAAGTTGGTCTTGTTATATTCTCCAGCACTGCAAAACTTTATGAATATGCAAACACAAGCATGAAATCAGTGATCGAGAGATATAACTCATGCAAGGAGGAAGAACAACAACTCATAAATCCAGAATCTGAGTTTTGGCAAAGGGAGGCAGAAATTTTAAGGCAGCAACTACAGAACCTCCAAGAAAATCATAGGCAATTGATGGGGCAACATCTTTATGGTTTGAGTGTGAGAAACCTACAAGATCTAGAGAACCAACTAGAAATGAGTCTCCAAGGTGTCCGAATGAAAAAGGAACAAATTCTAACAGAAGAAATCAAGGAGCTGAACCGAAAGGGCAACCTCATCCATCAGGAAAATTTGGAACTTTTTAAGAAAGTAAACCTGATGCAGGAGGAAAACACACAATTATGCAGAAAGCAGGTGTATGGCACAAGCGAAATAGAAGCAACAAGCAGAAATGGATTCATTCCAATTCCATATGGTATTCAAGTAGGAGGAGGAGGCTCACAGGCATTAGTCCAACTTCAGTTATGCCAGCCAGATCAAGAAGCCTATGAGACTTCAACAAGTGCAACAAGATGA 708 0.411 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTAKLYEYANTSMKSVIERYNSCKEEEQQLINPESEFWQREAEILRQQLQNLQENHRQLMGQHLYGLSVRNLQDLENQLEMSLQGVRMKKEQILTEEIKELNRKGNLIHQENLELFKKVNLMQEENTQLCRKQVYGTSEIEATSRNGFIPIPYGIQVGGGGSQALVQLQLCQPDQEAYETSTSATR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00081 235 Coils Coil 121 141 - -
Arst5g00081 235 Coils Coil 84 111 - -
Arst5g00081 235 Pfam K-box region 83 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst5g00081 235 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Arst5g00081 235 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Arst5g00081 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst5g00081 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst5g00081 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst5g00081 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst5g00081 235 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst5g00081 235 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Arst5g00081 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst5g00081 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst5g00081 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst5g00081 235 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Arst5g00081 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00081 Arst-Chr5 649191 657668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00081 1 233 MADS-box Gene Family AT2G22630 61.702 1.47e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst5g00081 K-box 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00081 K09264 - gmx:100795778 342.813