Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00080 ATGGGAAGAGGGAAGATTGTGATTCGGAGGATCGATAATTCGACGAGCAGGCAAGTTACTTTCTCGAAGAGGAGAAAGGGTTTGATCAAGAAAGCTAAGGAGCTTGCTATCCTCTGTGATGCAGAAGTTGGTCTTGTTATATTCTCCAGCACTGCAAAACTTTATGAATATGCAAACACAAGCATGAAATCAGTGATCGAGAGATATAACTCATGCAAGGAGGAAGAACAACAACTCATAAATCCAGAATCTGAGGTTAAGTTTTGGCAAAGGGAGGCAGAAATTTTAAGGCAGCAACTACAGAACCTCCAAGAAAATCATAGGCAATTGATGGGGCAACATCTTTATGGTTTGAGTGTGAGAAACCTACAAGATCTAGAGAACCAACTAGAAATGAGTCTCCAAGGTGTCCGAATGAAAAAGGAACAAATTCTAACAGAAGAAATCAAGGAGCTGAACCGAAAGGGCAACCTCATCCATCAGGAAAATTTGGAACTTTTTAAGAAAGTAAACCTGATGCAGGAGGAAAACACACAATTATGCAGAAAGGTGTATGGCACAAGCGAAATAGAAGCAACAAGCAGAAATGGATTCATTCCAATTCCATATGGTATTCAAGTAGGAGGAGGAGGCTCACAGGCATTAGTCCAACTTCAGTTATGCCAGCCAGATCAAGAAGCCTATGAGACTTCAACAAGTGCAACAAGATGA 711 0.4093 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTAKLYEYANTSMKSVIERYNSCKEEEQQLINPESEVKFWQREAEILRQQLQNLQENHRQLMGQHLYGLSVRNLQDLENQLEMSLQGVRMKKEQILTEEIKELNRKGNLIHQENLELFKKVNLMQEENTQLCRKVYGTSEIEATSRNGFIPIPYGIQVGGGGSQALVQLQLCQPDQEAYETSTSATR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00080 236 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Arst5g00080 236 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Arst5g00080 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst5g00080 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Arst5g00080 236 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Arst5g00080 236 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Arst5g00080 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst5g00080 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst5g00080 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst5g00080 236 Coils Coil 123 143 - -
Arst5g00080 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst5g00080 236 Coils Coil 86 113 - -
Arst5g00080 236 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst5g00080 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst5g00080 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst5g00080 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00080 Arst-Chr5 649191 657668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00080 1 234 MADS-box Gene Family AT2G22630 62.821 1.13e-101 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst5g00080 K-box 2.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00080 K09264 - qsa:O6P43_025186 352.058