Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00074 ATGGTGGAAGTTTCGTTTACAAGAACATGGTCACCTTCAGGAGATGGTGGTCTCCCCTTCAATATAGACATAAGGTATGTATTGAGAAGAGGGGATTCTGGGTTTTATCCATATGTAATATTGGAACGGGTAGAGGGATTTCCAGCTGTGGAAATTGATCAAATTAGGATTGTTTTCAAGCTCGCCCGTGACAGGTTCCGCTATATGGCTATATCAAACACAAGGCAGAGGATGATGCCATCTATGGCAGATAGAGAAAACGGTCAAACCCTAGATTATCCTGAAGCCGTTCTCTTAACCAAGCCATTACAACGAAATTTTCTTACAGAGGTGGATGACAAGTATCAATACTCAATTGAGAATGAAGACAACAAGATTAACGGCTGGACAAGCCCATATTCTGAGCCACGTGTCGGTTTCTGGATCTTAACACCCAGCAATGAGTTCCGCAATTGTGGGCCTGTCAAGCAAGATCTCACCTCTCATGTTGGCCCAATTGCCCTTTCGATGTTTGTGAGCAACCACTATGCTGGAAGGGAGGTAAATATGAAATTTCAGGAAGGGGAACTTTATAAGAAGGTTTTTGGCCCTGTTTTTATCTACCTCAACTCTGGTCCAAGTAATCAAAATTTGTGGTTAGATGCCGTACAAAAGCAATCCAATGAAGCCAAAAGCTGGCCATATAATTTCCCTCGATCAATCGATTTCATTCCAGCCAATAAACGTGGAACAATATCAGGAAGGTTGCAAGTCCAAGATAGGTTCATGAAAGGACAGAGCCTTCAAAATGCTAACAGTGCGTACGTTGGTTTAGGTTTACCTGGAGATCCTGGATCATGGCAGAAAGAAAGCAAGGGTTATCAATTTTGGACTCGAACCGACAAGAATGGTAATTTTGTAATCAACAATATTGTACCCGGTGATTACAATTTGTATGCATGGGTTCCTGGTTTTATTGGAGACTACAAATACAACAAGACAATAACCATCACACCAGGATGCTCCACCAACTTGAATACACTTGTGTATAATCCTCCGAGAAATGGTCCAACACTTTGGGAGATTGGAATTCCTGATCGCTTAGCTGCTGAATTTTTTGTGCCAGACGCTAACCCTAAGCTCATCAACAACTTATACAGGAATCACACCATTGACAAATTTAGGCAATATGGATTGTGGGAACGTTACGCCGAATTACATCCACATAATGATCTTGTATTCGTTGTTGGTGCTAATGACTATCGCAAGGATTGGTACTTTGCTCATGTTACAAGGAAAATAGGAGAGAAGAAATACAGACCATGCACATGGCAAATTGTATTTGACCTTCCAAATGTCACATCCAGAGGAATATACACACTACAACTGGCTTTGGCATCCTCAACTGAAGCTGAATTGCAGGTTTGGTTCAATGACCCTAAAAATGCAAATCCTGCACACTTCACAACAGGACAAGTAGGAGAAGACAATGCCATAGCAAGGCATGGCATCCATGGATTGTATAAGCTCTATAGCATAGGTGTAAGTGGGAAGCATTTGGTGAAAGGAAAGAACATCATCTATTTGAAGCAATCTAAAGCTTTAACTGCATTTGAAGGAGTCATGTATGATTATATCCGCTTAGAAGGTCCTCCACCTTCATCCCCTGGATTTGATCACTAA 1662 0.4146 MVEVSFTRTWSPSGDGGLPFNIDIRYVLRRGDSGFYPYVILERVEGFPAVEIDQIRIVFKLARDRFRYMAISNTRQRMMPSMADRENGQTLDYPEAVLLTKPLQRNFLTEVDDKYQYSIENEDNKINGWTSPYSEPRVGFWILTPSNEFRNCGPVKQDLTSHVGPIALSMFVSNHYAGREVNMKFQEGELYKKVFGPVFIYLNSGPSNQNLWLDAVQKQSNEAKSWPYNFPRSIDFIPANKRGTISGRLQVQDRFMKGQSLQNANSAYVGLGLPGDPGSWQKESKGYQFWTRTDKNGNFVINNIVPGDYNLYAWVPGFIGDYKYNKTITITPGCSTNLNTLVYNPPRNGPTLWEIGIPDRLAAEFFVPDANPKLINNLYRNHTIDKFRQYGLWERYAELHPHNDLVFVVGANDYRKDWYFAHVTRKIGEKKYRPCTWQIVFDLPNVTSRGIYTLQLALASSTEAELQVWFNDPKNANPAHFTTGQVGEDNAIARHGIHGLYKLYSIGVSGKHLVKGKNIIYLKQSKALTAFEGVMYDYIRLEGPPPSSPGFDH 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00074 553 CDD RGL4_M 241 341 IPR029413 -
Arst5g00074 553 Pfam Rhamnogalacturonate lyase family 2 111 IPR010325 -
Arst5g00074 553 FunFam Rhamnogalacturonate lyase B 238 338 - -
Arst5g00074 553 Gene3D - 237 341 - -
Arst5g00074 553 SUPERFAMILY Starch-binding domain-like 237 341 IPR013784 GO:0030246
Arst5g00074 553 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 545 - -
Arst5g00074 553 Pfam Polysaccharide lyase family 4, domain III 351 541 IPR029411 -
Arst5g00074 553 Pfam Polysaccharide lyase family 4, domain II 266 338 IPR029413 -
Arst5g00074 553 CDD RGL4_C 353 542 - -
Arst5g00074 553 Gene3D - 349 542 - -
Arst5g00074 553 Gene3D - 2 218 IPR014718 GO:0030246
Arst5g00074 553 CDD RGL4_N 1 211 - -
Arst5g00074 553 SUPERFAMILY Galactose-binding domain-like 348 542 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00074 Arst-Chr5 602928 606902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00074 2 544 Polysaccharide Lyase AT1G09890 55.818 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00074 K18195 - gmx:100776664 759.214