Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00052 ATGGATGAAATTCAGAGGGAAAAAGTCTATGTTGGTGTTGGAATTGATGTGCAAGATGGATTCAAGGTTTTGAATTGGGTTCTCAAGAATTGGAACAATAATAATTCTCATCCAATTTCTATTGTTATTCTCCATGTTGCTCACAACTTCTCCAATGATTATGTTTCTACACCATTTGGGAAACTTCCAGCAAGATCTGTGAATGAAGAGAAGCTTGAAGTTCTAAAGAAGTATGAAGAAGATAAAATCAAGAAGCTCTTTTCCAAGTATATTGCTTATTGTGATAAAGCCAAGGTGCCGGCAGAAATTCTTCAAGTTGAGAAAGTTGATGAACCTATCCATCAAAAGCGCATCCTAGATTTGATCTTTAGCCTTGGAATTACCAAATTGGTCATTGGCTTTTCATTCATGAAGCCCTCCTTGAAATCAAGAAGTGCCATAAGTGGATTGTTCTATGTTCACCAGCACAAACCATCATTCTGTGAATTGTTCATAGTTTGTGGTGGAGAACAAGTGTTCCTAAGAGCAAAAAATGAAGAGAAAATCATGGAGGATGAAAATGGTGTCACGGTTGCAAGGTTAAAAGACAAGGTAACCTTCAAAGATTGGCTTGAGAAAATAATGTTCAACGATAATAATAATAATAATAATAACAAATCAAACGCATCAACTTCAAAAAATCTTGAGTCATCAGCAGTTACCCAGAACCAATGGGAATTTTATCTTCGAGAAATTGATAATTACTATCAAGAATTGTTGATGTCATACTCCAATTTGGATGAGAGAAGCTGTGTGCAAGAAAATGATGGTTCATCACAGATTGGTCCAATTGAGACAGGCGTCATTATTGAACAGAACAATTCTTCTTCTAATACGAGTGCTACAGAAAAAATTGAGATCCTACAAAATAAACTGAATGAAGCTCAAATGACCATCCAAATGAAGAGGAAAGAAGCCAAGGATGAAATAGAGAGGCGCACAAAAGCAGAATGGGCAATATGTTTATGCAATAGTAGGGCTGAAGAAGTTGAATCAAGAATAAAGGAAGAAGTGAGCGCAAGGGAAGAAATTAAGAAGGAAGTAGAGGAAGAAAAAGAACAAACGCAGGAGATTCGAATAGACGTAGAAGAGAGGAAGAGGAGGCTCAAGTCACTATCAGAGCTCCATTCCGAGCTCTCAAAGAGGGTGCACGTGTCCAAGATAGCCAAGTCACGTGCGGAGAGGCAGCTGGAGAAAGCGATTGCGGAGAGAGCGGAGATGGTGAGGGAGATAGAGGAGCTGAGGAGACAGAGGGACGTGCTCAACAGAAGGATCGAGTTCTGCAAACAGAAGGACGCAATTGGAATGGCCGCAAGGCTCATGAGCCAAGAGGAGGCGGCTGCGTGTGCTTTCAGAGAGTACTCCGAGGAGGAGCTGCGCCTGGCCACGGACAACTTTTCCGACAGGTTGAGGTTCAAGTCCGGTGGAGATTGGAGCCATGTGTATAAAGGCCGTATGCCTCATTCCACCGTTGCCATCAAGATGCTTGCTTCTTCTTTGTCCCTTCAAGATTTCCAATCTAAGGTGAGAATTCTTGGTGATATTAGGCAGCCTCATCTGATTGCTATGGTGGGCTTTTGCTCCGAGCCCAAATGCGTAGTGTTCGAATACATGCACAACGGAAGCTTACGAGACATACTATTTTCTAGGAGAAGAAACCGGGCTTTAAAGTGGCATGATAGAATACGAATAGCTACAGAAGTTTGCTCAGGCCTAAGCTTTCTAAATTCAGTTAAACCAAGGCCCGCTATCCATTGTCACTTGACCCCATCCAACGTCCTCCTAGACCGGAACTATGTAGCCAAGATCACGGGCTTTGGGCTTGATGAGTGCAACGACGAGGAGTGTAACGTTGAGTCAGATATCCGGGCCTTGGGGGTGTTTTTGCTACACCTTTTAACAGGAAGAAATTGGGCCGGGCTTGTTGAGGAGGCGATGATAGTAGACACGGATAGAGAAGCATTTGTTGGGGTTCTCGATGAGACGGCCGGAGCATGGCCGTTGGATCTAGCTAGAGAGATTGCGGGCCTAGGGATGAGGTGCATGTCGAGGGGAGAGTTGAGTATTGGAATGGTGATGGAGGAGCTGAGAGAGATTAGAAGAAAGGGTGATGAGATAGCAGCAAGAGAAGGGCGAAGAGTAATGAGAAGTGGAAGTGGTGCAGATAGAGATTGGTCAAGTGCTGTACCGAGTGTTTATCTTTGCCCTATACTTCAGGATGTAATGAAGAATCCACACGTGGCGGCAGATGGCTTTTCATACGAGCTTGAAGCAATACAACACTGGTTGCAAACGGGACATGACACGTCACCAATGACAAACTTAAGGCTTAAACACACATTCCTCACCCCTAATCACAGCCTTCGCTCCTTAATTGAAGATTGGCATACCAAGAATAACACATCATCTGCAGTTTTAAATTAG 2463 0.4324 MDEIQREKVYVGVGIDVQDGFKVLNWVLKNWNNNNSHPISIVILHVAHNFSNDYVSTPFGKLPARSVNEEKLEVLKKYEEDKIKKLFSKYIAYCDKAKVPAEILQVEKVDEPIHQKRILDLIFSLGITKLVIGFSFMKPSLKSRSAISGLFYVHQHKPSFCELFIVCGGEQVFLRAKNEEKIMEDENGVTVARLKDKVTFKDWLEKIMFNDNNNNNNNKSNASTSKNLESSAVTQNQWEFYLREIDNYYQELLMSYSNLDERSCVQENDGSSQIGPIETGVIIEQNNSSSNTSATEKIEILQNKLNEAQMTIQMKRKEAKDEIERRTKAEWAICLCNSRAEEVESRIKEEVSAREEIKKEVEEEKEQTQEIRIDVEERKRRLKSLSELHSELSKRVHVSKIAKSRAERQLEKAIAERAEMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLMSQEEAAACAFREYSEEELRLATDNFSDRLRFKSGGDWSHVYKGRMPHSTVAIKMLASSLSLQDFQSKVRILGDIRQPHLIAMVGFCSEPKCVVFEYMHNGSLRDILFSRRRNRALKWHDRIRIATEVCSGLSFLNSVKPRPAIHCHLTPSNVLLDRNYVAKITGFGLDECNDEECNVESDIRALGVFLLHLLTGRNWAGLVEEAMIVDTDREAFVGVLDETAGAWPLDLAREIAGLGMRCMSRGELSIGMVMEELREIRRKGDEIAAREGRRVMRSGSGADRDWSSAVPSVYLCPILQDVMKNPHVAADGFSYELEAIQHWLQTGHDTSPMTNLRLKHTFLTPNHSLRSLIEDWHTKNNTSSAVLN 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00052 820 Pfam U-box domain 742 813 IPR003613 GO:0004842|GO:0016567
Arst5g00052 820 Coils Coil 340 395 - -
Arst5g00052 820 ProSiteProfiles Protein kinase domain profile. 480 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst5g00052 820 CDD RING-Ubox_WDSUB1-like 743 798 - -
Arst5g00052 820 SUPERFAMILY RING/U-box 730 813 - -
Arst5g00052 820 ProSiteProfiles U-box domain profile. 741 815 IPR003613 GO:0004842|GO:0016567
Arst5g00052 820 Coils Coil 403 444 - -
Arst5g00052 820 Gene3D Transferase(Phosphotransferase) domain 1 551 729 - -
Arst5g00052 820 PANTHER OS02G0152300 PROTEIN 9 806 - -
Arst5g00052 820 Coils Coil 291 325 - -
Arst5g00052 820 Gene3D Phosphorylase Kinase; domain 1 450 550 - -
Arst5g00052 820 SUPERFAMILY Protein kinase-like (PK-like) 464 656 IPR011009 -
Arst5g00052 820 Pfam Protein tyrosine and serine/threonine kinase 489 625 IPR001245 GO:0004672|GO:0006468
Arst5g00052 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 741 817 IPR013083 -
Arst5g00052 820 SMART Ubox_2 745 808 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00052 Arst-Chr5 417808 422543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00052 7 811 U-box Gene Family AT5G65500 48.960 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Arst5g00052 PK_Tyr_Ser-Thr 5.3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00052 - - ahf:112747336 1535.01