Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00030 ATGGCGAGGGAGAAGATTCAGATAAAGAAGATCGACAACGCCACGGCCAGGCAGGTCACTTTCTCCAAGCGACGGAGAGGTCTCTTCAAGAAAGCGGAGGAGCTCTCCGTTCTCTGCGACGCCGATGTTGCCCTCATCATCTTCTCTTCCACCGGCAAGCTCTTTGACTACTCCAGCTCAAGTATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTGGCAAAGATGGAACAACCCTCTCTTGAGTTGCAGCTAGTTGAAAACAGCAACTACACCAGACTTAGCAAAGAAGTTGCTGAGAAGAGCCATAAACTAAGGCAGCTGAGAGGAGAGGATCTTCAGGGATTAAATATAGAAGAATTACAACAATTGGAGAGGTCTCTTGAAACGGGATTAGGCCGTGTAATAGAGAAAAAGGGAGAGAAGATTATGAGTGAGATCAATGACCTCCAAAGAAAGGGAATGCAATTGGTGGAAGAAAACGAGCGACTAAGGCGTCAAGTGGTGCAGATTACTCATGGGAAAGGGCATCATGGTGGTGGTGAATCTGAGATCATAGTTGGGGAGGAAGGCCAGTCTTCAGAGTCTGTTACAAACGTTTGCAACTACAATAATAATACTAACAACAATAATAATGATAGTTCAGAAATTTCACTCCAGTTGCGGCTATCGTATTCTGGTTAA 693 0.4473 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKEILERHHLHSKNLAKMEQPSLELQLVENSNYTRLSKEVAEKSHKLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMSEINDLQRKGMQLVEENERLRRQVVQITHGKGHHGGGESEIIVGEEGQSSESVTNVCNYNNNTNNNNNDSSEISLQLRLSYSG 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00030 230 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst5g00030 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst5g00030 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst5g00030 230 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Arst5g00030 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst5g00030 230 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Arst5g00030 230 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst5g00030 230 Coils Coil 94 114 - -
Arst5g00030 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst5g00030 230 Coils Coil 150 170 - -
Arst5g00030 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 199 - -
Arst5g00030 230 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Arst5g00030 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst5g00030 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst5g00030 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst5g00030 230 FunFam Transcription factor, MADS-box 13 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00030 Arst-Chr5 277860 283974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00030 1 230 MADS-box Gene Family AT2G22540 68.182 7.45e-110 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst5g00030 K-box 4.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00030 - - qsu:112018313 325.865