Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00023 ATGGGCATGCAGCGAGTTCGAAATCACTATTACTCTGGAGCTCAAATTCTAAGGAGTTCTTCAATAACACCATATGATTACATCTTCACAAAGCCAAGATCAAAGGCAGCGGACAAAAAACAAGCAGCTGTAAAACACAGTCAAGCAGAAAAGAGACGCAGGATGAGAATCAACACTCAATATGAGGCCCTCAAAAACCTCTTCCAAAATAAAACCAAAACGGACAAGGCATCATTATTGGCAACTACTATTGAAATAGTTAAAAATTTGAGAAAAAATAGTATTCTACAGGAAGCTTCTAGTAGCTCAAAGAAGGAAATGAATAAGGTTACTAACCAGAAGAAAATGCAAGAAGCTTGTAGCCCAAGAAATGATGATGTGTTTCCTAGTTGGGAAGACAAGTGGAGTCTAAAACATGAAGAGGATCTAATGAAGGCTACATTGAATTGTGAGGATAAGCCAGGATTGATGTCAACAATAGCAAAGGCAATGGGGTCAGTGGAAGCCAAGGTTGTAAAGGCTGAGATGGTGAATGTTGGAGGAAGAACTAGGGTTGTGTTGTGGGTCAAAGATTCCAATGGTGATCGTAAAGGTGAAGAGATTCTCAAGAGGACACTCAGTACTCTCATGCAAAGGCCAGTCCCTAAAAAGAGGCGTTTTACTCAATAA 669 0.3991 MGMQRVRNHYYSGAQILRSSSITPYDYIFTKPRSKAADKKQAAVKHSQAEKRRRMRINTQYEALKNLFQNKTKTDKASLLATTIEIVKNLRKNSILQEASSSSKKEMNKVTNQKKMQEACSPRNDDVFPSWEDKWSLKHEEDLMKATLNCEDKPGLMSTIAKAMGSVEAKVVKAEMVNVGGRTRVVLWVKDSNGDRKGEEILKRTLSTLMQRPVPKKRRFTQ 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00023 222 ProSiteProfiles ACT domain profile. 145 222 IPR002912 -
Arst5g00023 222 CDD ACT_UUR-ACR-like 147 211 - -
Arst5g00023 222 SMART finulus 47 96 IPR011598 GO:0046983
Arst5g00023 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 92 IPR036638 GO:0046983
Arst5g00023 222 PANTHER TRANSCRIPTION FACTOR BHLH30 32 219 IPR045847 GO:0003700|GO:0006355
Arst5g00023 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Arst5g00023 222 Pfam Helix-loop-helix DNA-binding domain 44 90 IPR011598 GO:0046983
Arst5g00023 222 MobiDBLite consensus disorder prediction 98 118 - -
Arst5g00023 222 Gene3D - 32 93 IPR036638 GO:0046983
Arst5g00023 222 MobiDBLite consensus disorder prediction 98 123 - -
Arst5g00023 222 SUPERFAMILY ACT-like 144 209 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00023 Arst-Chr5 229059 230006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00023 46 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 32.948 5.88e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst5g00023 HLH 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00023 - - aip:107639898 424.861