Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00014 ATGGAATTCGACGAGCAAGAGGAGCAAGAAGAAGAGCTGTGTGTGCCAGGAGGAACGGGTTATGACCCTATTGGAAACCCGACCCGGGTTAAAATGTCCGGTTCGGAACCCATGTTGGTGGTTCAACCCATGACCGTGAGGAACAACAACAACAACAACAACAGCAGCAACATGGTGAAGCCAAAATACAGAGAGTGTTTGAAGAACCATGCCGTGGGGATCGGCGGACACGCACTCGACGGTTGCGGCGAGTTCATGCCCGCCGGCACGGAGGGAACCCTCGACGCACTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACTGAGCTCGCCGGAGCAGGACCAGGAGGAGGAGGACCGTATCTCCTGACTCACCACCCCCACCACCACCAGCCGCCGCCGTTTGCGGCCTACTACCGGACACCGGCGGGGTACTTACACGTGAGCGGGGGGCAGCAGAGAGCGGGAACGCTGGCTCTCCCTTCGACCTCCGGAGCTGGAGGTGGAGGAACAGCGCGGGATTTCGAGCAGGAAGACGTGAGTGGCGGTGGCGGGGGCGGAGGAGGAGGGTCATCATCACGGAAGAGGTTCAGGACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGAACTTGCAGAGAGATTGGGATGGCGGATTCAGAAACACGACGAGGGTGCGGTTCAAGAGTTTTGTAACGAGACGGGTGTGAAGCGGCATGTTCTCAAGGTTTGGATGCATAACAACAAACACACCCTCGCTTCATGA 783 0.5837 MEFDEQEEQEEELCVPGGTGYDPIGNPTRVKMSGSEPMLVVQPMTVRNNNNNNNSSNMVKPKYRECLKNHAVGIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKETELAGAGPGGGGPYLLTHHPHHHQPPPFAAYYRTPAGYLHVSGGQQRAGTLALPSTSGAGGGGTARDFEQEDVSGGGGGGGGGSSSRKRFRTKFTQEQKEKMLELAERLGWRIQKHDEGAVQEFCNETGVKRHVLKVWMHNNKHTLAS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00014 260 SUPERFAMILY Homeodomain-like 186 257 IPR009057 -
Arst5g00014 260 MobiDBLite consensus disorder prediction 1 20 - -
Arst5g00014 260 Pfam ZF-HD protein dimerisation region 62 113 IPR006456 -
Arst5g00014 260 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 112 IPR006456 -
Arst5g00014 260 FunFam Zinc-finger homeodomain protein 2 193 260 - -
Arst5g00014 260 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 112 IPR006456 -
Arst5g00014 260 MobiDBLite consensus disorder prediction 161 202 - -
Arst5g00014 260 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 258 - -
Arst5g00014 260 Gene3D - 186 260 - -
Arst5g00014 260 NCBIfam homeobox domain, ZF-HD class 199 255 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00014 Arst-Chr5 170615 171958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00014 59 258 ZF-HD Transcription Factor Family AT4G24660 55.500 2.63e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Arst5g00014 ZF-HD_dimer 8.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00014 - - aip:107639896 413.305