Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00004 ATGGACGAAGCGCTGAGGCGCCTCAACGGCATGTCCCCCCTTCCCGAACCACCTTCCAACAAACCCACCAAGCGGACCCTGCGAGACACCAGCACTTCGCCCGCTGCCGGAGCCATCAGGTACCGTGGCGTCAGGCGGAGGCCATGGGGCCGTTACGCCGCCGAGATAAGGGATCCTCAGTCCAAGGAGCGCCGTTGGCTGGGGACTTTCGACACCGCAGAGGAAGCCGCCTGCGCCTACGACTGCGCTGCCAGAGCCATGCGTGGCCTTAAGGCCAGGACCAACTTTGTGTACCATACTTCACCTCCTCACTCTTCTTCCATCACCGTCACTAACAACCATAACAATCTCCTTAACCTCCATAACCACCTCTTCACTCATAACCAGTTCAGCTTCCTTAATCATCATAACCAACTCTTCAACGGCCATAACCGCCACTTCGGGGGTTGTTGGTCTGACCCTTCTTCTTCAACCTTCCAACAACAGCGAAACCTTCACTCCATCGACATGCTTCTCCAGGACTTTATAGCCTCTTCTTCCCCCGACTATTTATGCGACACCAAGGGCAGTTTTGTCAATTCACATCCTGTAAATGTTGCTAATAACTACAGCGCACCTTCTGATCATGGTGGTGGCGAAGAAGACTCAAAGGAGCAATTGTATGAAGGTTCAGAGTCGTCAGGCTTGTTGGAAGAAATAGTTAATGGTTTCTTGAAGAAAAAGCCAAAGCTCAACAAATGCGAGAGATCGTTAGGTACCAGTACCACTGCTACAGACGGTTCATGCCACTTGTCACTTCTTCCGCCTCCTCTTCCTCTGGTTGTTTCCGGCGAGTCGAAGAGAGACGATGGTTTCGGCGTGCATTTGGATCAGCAGGGTTTACATTACATGCAGCAGATCAGTGGTGGTTTCAATAATGATTTTAGCAATATGGTTATGCAGCCTAACATGCCTCTTCAAGAGAATGACAACCAAATGAAGATGATGATGTTGAATAATGATAATAATCATGCAGAAGTAGATTGCTCTATCATAGACAACATTTTTCAGGATGCATAA 1059 0.4948 MDEALRRLNGMSPLPEPPSNKPTKRTLRDTSTSPAAGAIRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYHTSPPHSSSITVTNNHNNLLNLHNHLFTHNQFSFLNHHNQLFNGHNRHFGGCWSDPSSSTFQQQRNLHSIDMLLQDFIASSSPDYLCDTKGSFVNSHPVNVANNYSAPSDHGGGEEDSKEQLYEGSESSGLLEEIVNGFLKKKPKLNKCERSLGTSTTATDGSCHLSLLPPPLPLVVSGESKRDDGFGVHLDQQGLHYMQQISGGFNNDFSNMVMQPNMPLQENDNQMKMMMLNNDNNHAEVDCSIIDNIFQDA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00004 352 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Arst5g00004 352 FunFam Ethylene-responsive transcription factor 2 40 98 - -
Arst5g00004 352 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Arst5g00004 352 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Arst5g00004 352 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 219 - -
Arst5g00004 352 MobiDBLite consensus disorder prediction 1 38 - -
Arst5g00004 352 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Arst5g00004 352 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Arst5g00004 352 CDD AP2 40 96 IPR001471 GO:0003700|GO:0006355
Arst5g00004 352 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Arst5g00004 352 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Arst5g00004 352 MobiDBLite consensus disorder prediction 202 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00004 Arst-Chr5 26957 28111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00004 1 98 AP2-EREBP Transcription Factor Family AT1G24590 60.345 5.49e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst5g00004 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00004 - - aip:107639893 641.343