Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g04425 ATGGAGGGGAGAGGGAGTAGTTTTGTGAAGAATGGGGAGCTGAGATTGCCTCCAGGATTCCGGTTTCACCCGACGGATGAAGAGCTGGTGGCTCAATACTTAAAGCGCAAGGTCTTCTCCTGCCCGTTGCCGGCCTCTTTCATTCCTGAGGTTGATATTTGCAAGTCCGATCCATGGGATTTACCAGGTGATTTGGAGCAAGAGAGGTACTTCTTCAGCACGAGGGAGGCCAAATACCCCAACGGGAACCGATCCAACAGAGCCACTAACTCGGGCTACTGGAAGGCCACGGGCTTGGACAAACACATCGCAACTTCAAAAGGCCACCAACTTATTGGCATGAAGAAGACTCTCGTCTTTTACAGAGGCAAGCCTCCTTATGGATCAAGAACAGATTGGATCATGCACGAGTATCGCCTTGTCTCCCACTCCCACCTGCTTCCCATGCAAAATTGGGTTCTCTGTCGCATATTCTTCAAGAGGAGAGCACCGGCTAATGCTAAGAATGTTCTACTGGATCACAATTCCCATTCGGCATCAGCATCAGAGGCCTTCACCATCAGCCATGAGGGCAGCAACTCTAAGGTGGTTTTCTACGATTTCTTGGCACAGAACAGGGCTGATTTGAACCGCGTGCCCCCTCCTGCTTCTTCGACCTCTGGCACCAGTGGAATCACCACCGAATCCGATGAGCATGAAGACAGCAGTAGCTGCAACAGCTTTCCTTTTTTCAGCAAGCATCAATCCCGCAGGAAACCGACCGGCATTAAAGGTATTTCGTGTGTGCATGTGTGTGCTGCCTTTTCTCATGTTAACAAGCAACCAGACAATTTCTGTCACATATGGATAACGATGAAATCATACAGGAAAACATATAATCATCACATTCATCCAATTCATGGTCAACCATTATGGGAGCAAGCAGAGGAATGCAACAGGCCACATGCACCTAAAATCAAGAAGAAACCTGAAAAACTCAAGATGAAGAGAAGGATGGATGCAGATGAGAAGAGTGGAGTAGGAACTAAAGAGCCTAAAGTTGATACAAAACTATTGAGTAACAGTGGAGATAATATACATCTAAAAGGGCAGTTTGAGACCTTTACCTGCAGCTTCTGTGGTGAAAAATGA 1131 0.4721 MEGRGSSFVKNGELRLPPGFRFHPTDEELVAQYLKRKVFSCPLPASFIPEVDICKSDPWDLPGDLEQERYFFSTREAKYPNGNRSNRATNSGYWKATGLDKHIATSKGHQLIGMKKTLVFYRGKPPYGSRTDWIMHEYRLVSHSHLLPMQNWVLCRIFFKRRAPANAKNVLLDHNSHSASASEAFTISHEGSNSKVVFYDFLAQNRADLNRVPPPASSTSGTSGITTESDEHEDSSSCNSFPFFSKHQSRRKPTGIKGISCVHVCAAFSHVNKQPDNFCHIWITMKSYRKTYNHHIHPIHGQPLWEQAEECNRPHAPKIKKKPEKLKMKRRMDADEKSGVGTKEPKVDTKLLSNSGDNIHLKGQFETFTCSFCGEK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g04425 376 ProSiteProfiles NAC domain profile. 16 160 IPR003441 GO:0003677|GO:0006355
Arst4g04425 376 Gene3D NAC domain 25 164 IPR036093 GO:0003677|GO:0006355
Arst4g04425 376 MobiDBLite consensus disorder prediction 324 353 - -
Arst4g04425 376 MobiDBLite consensus disorder prediction 211 226 - -
Arst4g04425 376 Pfam No apical meristem (NAM) protein 17 140 IPR003441 GO:0003677|GO:0006355
Arst4g04425 376 MobiDBLite consensus disorder prediction 210 237 - -
Arst4g04425 376 SUPERFAMILY NAC domain 12 160 IPR036093 GO:0003677|GO:0006355
Arst4g04425 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 232 - -
Arst4g04425 376 MobiDBLite consensus disorder prediction 328 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g04425 Arst-Chr4 121946727 121953678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g04425 8 241 NAC Transcription Factor Family AT5G13180 61.789 7.14e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst4g04425 NAM 6.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g04425 - - adu:107486843 764.607