Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g04412 ATGGCATCGTCACTGGAGGAGCTTCTTGCCAAGGAAGGGTTCAAAGGAATCAGAAGAGTGGAAAGGACTAGATCGTCCTTCCACGGCGGTGCTTTGACTGAGCCACGGAGACTCTCCCTATCGACTGAAGGAGTTACAAGGATCAGAACAAAGTCTGAGTCCTCTTCCTTTCAGGGTCAAAGCAGGAGGCCAAGGGATAAGCCCTTTCTTAGAGAGAAAATAATACATCAACGGTTGAACTATGAAGCTGCTCAGAAACCTTGTGACAACACAAATGAAATTTCTAATAATGCAGAAAGAGGCAAAGAAATTCCTGCCATGACAAATAATAACTCAAGTCGCACAAGTTTTGAAGACAGCAACAACAAAAAGAATCAAGATCACTATATTCATTCGGCTTCTAATCTTGCTCTTGATCAAGTTGCTGTCCAAGCAGTAGTCTCCATTCTGAATGGATACATGAAACGTTTTCTAAGAGATGAGGACTTCCGGGCTACACTGCGTCATAATTGTTTCTCCTCTTTGAATTTCATTGAATTGAAAGAAGAGAACAATACAGAGACCAAAATCATAACAAGCCTTGAGCAAGCAATCGAGACCATTGAACAAACTGCCGAGCAGTCCGCACCTTCCACACATCTGAAAAGAGCCACAATGCAGCTAAGCATCATCACGGGCCTGAGTTTAAACGATTTGAAGCACGGTTGTACCTGTGGGATCCCGAATTATAAGTTGTCAGCCTGTGCTCATCTTTATCTCAGTGTGGTATATGTGATACAGAGAAAAAGCAAGGTATCTGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCGCCTTATCAGGCGCGATCGATATTGTTGCCTGAACTCTGGGAGCAACTATTTTCCCCACAACTTACCCATTTGAAGGCATGGTACGACAAAGAAGCTGAGATTTTAGCAACCACAACAAACAGAACAAGGAAGACAAAGCTTCTTCAACAAGTGTATAATGAACATTTGGATTCTGCTACTCATATATTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTTGAGTCTCCAGCTATTCCTTCCATTAGCGTTCCATCAATATCTGTCGCAGCAAGTTCATTTGGTCATTCTTCAGACTCTGCTAGCTCCAACGAACCCTTCTCACCCCAGCCAATGATCAGCAAGAAACTTTATGATTCTGTCTTTGGTAGCTCCAGCAAAACCAAAGTTTATGACGCTCAGGATAACATAGAAATGTGTGTTTCGGGCTCTTATAGTTCTACTATTGTTAAACAAACGTTAACATATGAGTCTGAAACAACTAAATTTACAGATCAGGATATTGAAGATTTCGCTCTCGGTTTACCAATTGAAGCGCTCCATCAGAAAGGAACTCAAGTTACAGCAGCAGAAGAATTAAAGGAAAGGGGTATCAGCAATAACATTGACAAACCCTTCTCCACACAAACCTATTTAGACAGCCACATAGTGGATGCTCTATCATTTGGTAAGGAAGATGAACTTACTCTCATAAGGCCAAACAAGATGAGGTCTGCTCTTGCAGCATTATGTTCTCCAAGCACTCCAGACGAATTTATTTGTCCTCTTACGGGAACTGTCTTTGAGGAACCAGTCACCCTGGAGACTGGTCAAACCTTTCAAAGAGAAGCCATCAAGGCGTGGTTTGAGAAGGGAAACAGAACATGTCCGGTAACTGGAAATACTTTAGAATTTGTGGCTATGCCGCTTACCAACCTTATTTTGAAGCGTGTGATTGATAAATGGAAGTCAGAAAGTTTGGATCACCTTCTAAATCTTGCTTCTCAAACAGTGGGAAACTCAAAGGAATTTAACTCAAGAAATGATGAGGTTGCTGTTTTCAAATTGGAGAGTTTCCTGTCTTCTTTCAATGATGAGGAGAAAAGAACTTATGCCAAGTATCTCATCTCTATAGGAGTTCTATCATTTCTTTTTAGGAGGTTTGAACTGGGAAATTTGGAGGAAAAATCACGTGTGGTGGCACTCTTGTTAATTTGTATTGTATCAGAATCTCGCTGCATATATCGGATAGCAGAAAATATCAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAGGAGGTTACTCCATTAACAAATGCAATATTATTGCTTACTGAACTTTCATCCATGAAGAGGAGAAAGGATGTTACATCATTCATTAGCGACTTGGTGGGTGAAGATGTTTTTAAAACACTTCGCATTCTACTCAAGTATCTTAACAAATCTACTTCACAAGAAAAGTCCCTAACCGCCGTTCTGTTGCTGCACTTTGATCTACTGGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGGTGGCAGTGAATGTCATTACGGCAGCACTTGATGCCAGCTTAAATGATGAGAAGGCCCGAGCGGAGTGTTGCAGAGCACTTCTAGTTTTGTGTGGGCACTTTTCCTCTAATGGGAGGATACTGACAAAGACTAGAACCTTTGAAGAAGCAGATTGCAATATCAACACATCGGAAGTAAGACTTCAAGGCCATGAAGAAGAGGGTCTACTGTGGGATCATGCAGCCACTTTGTCTGAAGATGAAGAAGCAATGGTAGAAGAGTTGTTAATGAAGTTGTTAGAATCACTAGTTGGAAATGGAGAAAGCCCATTTTTGACCAACTTATGTAGATGCCTAGATTCTAGACACCTAGATTTGGTGAGGGAGTGTCTAGTAACGGTTAAATGGTTGAGCTCCTCACTCTCCAAGCTAATGAATGTGGGATTTCATCTTCCTGCCTTCTTAGCTCTCATCTCTCAGTTGAAAGGAATCTTGGAAAATGGAGAACTTGAGCTCAAGACTCTTGCGTCAGTGTCCTTGCTTAATTTCAGTAAAATATCAGAATGCAGAACTCTGTTGAAGACAATGGCAGAAGATATTGCACCCCTTCTTCATAGGCTTGTCGACGTAACATGGACTGCTAAGCAGCTGCATGCCATTGTGTCTGGGGGAAATCTGTAG 3009 0.4148 MASSLEELLAKEGFKGIRRVERTRSSFHGGALTEPRRLSLSTEGVTRIRTKSESSSFQGQSRRPRDKPFLREKIIHQRLNYEAAQKPCDNTNEISNNAERGKEIPAMTNNNSSRTSFEDSNNKKNQDHYIHSASNLALDQVAVQAVVSILNGYMKRFLRDEDFRATLRHNCFSSLNFIELKEENNTETKIITSLEQAIETIEQTAEQSAPSTHLKRATMQLSIITGLSLNDLKHGCTCGIPNYKLSACAHLYLSVVYVIQRKSKVSAKHLLQVFCDSPYQARSILLPELWEQLFSPQLTHLKAWYDKEAEILATTTNRTRKTKLLQQVYNEHLDSATHIFAVYYKDWLTEGVESPAIPSISVPSISVAASSFGHSSDSASSNEPFSPQPMISKKLYDSVFGSSSKTKVYDAQDNIEMCVSGSYSSTIVKQTLTYESETTKFTDQDIEDFALGLPIEALHQKGTQVTAAEELKERGISNNIDKPFSTQTYLDSHIVDALSFGKEDELTLIRPNKMRSALAALCSPSTPDEFICPLTGTVFEEPVTLETGQTFQREAIKAWFEKGNRTCPVTGNTLEFVAMPLTNLILKRVIDKWKSESLDHLLNLASQTVGNSKEFNSRNDEVAVFKLESFLSSFNDEEKRTYAKYLISIGVLSFLFRRFELGNLEEKSRVVALLLICIVSESRCIYRIAENINRKCLLELLHSKEVTPLTNAILLLTELSSMKRRKDVTSFISDLVGEDVFKTLRILLKYLNKSTSQEKSLTAVLLLHFDLLVEPQKFSIYREVAVNVITAALDASLNDEKARAECCRALLVLCGHFSSNGRILTKTRTFEEADCNINTSEVRLQGHEEEGLLWDHAATLSEDEEAMVEELLMKLLESLVGNGESPFLTNLCRCLDSRHLDLVRECLVTVKWLSSSLSKLMNVGFHLPAFLALISQLKGILENGELELKTLASVSLLNFSKISECRTLLKTMAEDIAPLLHRLVDVTWTAKQLHAIVSGGNL 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g04412 1002 SMART Ubox_2 529 593 IPR003613 GO:0004842|GO:0016567
Arst4g04412 1002 MobiDBLite consensus disorder prediction 26 70 - -
Arst4g04412 1002 SUPERFAMILY RING/U-box 525 596 - -
Arst4g04412 1002 MobiDBLite consensus disorder prediction 88 125 - -
Arst4g04412 1002 Pfam U-box domain 527 596 IPR003613 GO:0004842|GO:0016567
Arst4g04412 1002 CDD RING-Ubox_PUB 527 575 IPR045210 -
Arst4g04412 1002 PANTHER OS04G0584500 PROTEIN 493 998 - -
Arst4g04412 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 525 599 IPR013083 -
Arst4g04412 1002 SUPERFAMILY ARM repeat 650 970 IPR016024 -
Arst4g04412 1002 MobiDBLite consensus disorder prediction 39 62 - -
Arst4g04412 1002 Coils Coil 830 850 - -
Arst4g04412 1002 ProSiteProfiles U-box domain profile. 525 600 IPR003613 GO:0004842|GO:0016567
Arst4g04412 1002 MobiDBLite consensus disorder prediction 88 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g04412 Arst-Chr4 121812946 121817236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g04412 527 641 U-box Gene Family AT5G42340 32.174 1.20e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g04412 - - gmx:100820501 1224.54