Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g04410 ATGGCATCAACATCTTGTGTGAGTAACATGCCATTACCCGCCACTACTATGACTTGGAACTCTCACCAAAATCCTGCACCACTTGCAAAGTATGAGGAGGTTACAACGAATCCCAAGCTTTTCATGAGTACTCTAGAGAAGCTCCATGCTGATCTGGGAACCAAGTTCATGATACCCATTATTGGAGGAAAAGAACTGGATCTGTTTCACCTCTTCATTGAAGTGACTTCTCGAGGAGGGATTGAGAAGATTATCAAAGAGAGAAGATGGAAAGAAGTAACTCAAACTTTCAACTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGCAAGTACTACTCTTCACTACTTTACCACTATGATATATACAGTACAAAAATATAACTTGACTTCAATTTGTCAGATGTTGTGCAAAGAGCACAATTTTCACAGCCTTGTCTTGGCTTCCAACATTCAAGGGTTGATGCTACTGCCGAATCATCTCAAGGATCTGCAGCAGTAGTTGGAGTGATCGATGCAAAATTTGAAAGTGGATATCTGATTACAGTTTCAATAGGTTCAGAGGTGCTGAAAGGTGTACTTTATCAGGATCCACATCCACATACACATCCACAGGGAGCATTTCAGAGTGTTATGGCCAAGAACACCAACAATAATTGTAATTCTTCATTGGGTGTTGTCCACCGTCGTCGTCGTAGGAAGAAATCAGAGATCAAAAGGAGGGATCCTGCTCATCCAAAACCTAACAGAAGTGGCTACAATTTCTTCTTTGCTGAGCAACATGCAAGACTAAAACCACTACACCAAGCCAAGGACAGAGAGATTAGTAGGATCATTGGTGAACTTTGGAACAAGTTAAAAGATCCCGAAAGATTAGTATATCAAGAGAAGGCTTTAAAGGATAAAGAGAGGTACAAAGCAGAAATGGAAGATTATCGTCAGAAACGCAACAATAATAATAATGCTGCTATGCTGCCATTGCAACAACAGCTTCCGGAAGTGGATGAGAACGAAGAAGGCTCTCTTCAAAGTCAAACTCCTGAAGAGGAGAGCACTTCTGGTGGTAGCGAAAATGAGAATGATGTTAACATGGATGCTTCTCTTCCTCTTCCTCCTGTTACTACTACTACTACACTACCTCCTCAACCTACATTTTTTACTTTAGACAAACCATCCATGGAAGGAGATCATTATAACCTTGGACATCAAAATATCCATGACTCAAAAAATATGTTGACAATGCTTTAG 1251 0.4037 MASTSCVSNMPLPATTMTWNSHQNPAPLAKYEEVTTNPKLFMSTLEKLHADLGTKFMIPIIGGKELDLFHLFIEVTSRGGIEKIIKERRWKEVTQTFNFPSTATNASFVLRKYYSSLLYHYDIYSTKIXLDFNLSDVVQRAQFSQPCLGFQHSRVDATAESSQGSAAVVGVIDAKFESGYLITVSIGSEVLKGVLYQDPHPHTHPQGAFQSVMAKNTNNNCNSSLGVVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQAKDREISRIIGELWNKLKDPERLVYQEKALKDKERYKAEMEDYRQKRNNNNNAAMLPLQQQLPEVDENEEGSLQSQTPEEESTSGGSENENDVNMDASLPLPPVTTTTTLPPQPTFFTLDKPSMEGDHYNLGHQNIHDSKNMLTML 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g04410 416 MobiDBLite consensus disorder prediction 335 386 - -
Arst4g04410 416 SUPERFAMILY HMG-box 234 326 IPR036910 -
Arst4g04410 416 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 247 314 IPR009071 -
Arst4g04410 416 MobiDBLite consensus disorder prediction 310 392 - -
Arst4g04410 416 FunFam High mobility group B protein 15 229 324 - -
Arst4g04410 416 SMART bright_3 36 127 IPR001606 GO:0003677
Arst4g04410 416 MobiDBLite consensus disorder prediction 230 254 - -
Arst4g04410 416 CDD HMG-box_AtHMGB9-like 247 313 - -
Arst4g04410 416 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 353 - -
Arst4g04410 416 SMART ARID_2 32 122 - -
Arst4g04410 416 Gene3D High mobility group box domain 231 332 IPR036910 -
Arst4g04410 416 CDD ARID_HMGB9-like 37 121 IPR045303 GO:0003677
Arst4g04410 416 Gene3D - 14 135 IPR036431 GO:0003677
Arst4g04410 416 SMART hmgende2 246 315 IPR009071 -
Arst4g04410 416 Pfam HMG (high mobility group) box 247 314 IPR009071 -
Arst4g04410 416 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Arst4g04410 416 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Arst4g04410 416 Coils Coil 296 323 - -
Arst4g04410 416 SUPERFAMILY ARID-like 31 129 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g04410 Arst-Chr4 121790720 121792997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g04410 1 334 ARID Transcription Factor Family AT1G04880 54.722 9.33e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Arst4g04410 ARID 1.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g04410 - - qsa:O6P43_023979 398.282