Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g04368 ATGAAGATTAACGTGAAGACCCTTAAAGGAACTCACTTTGAAATCCAAGTGCAACCCCAAGACACGGTTGCTGATGTGAAGAGAAATATAGAGAGAGAACAAGGTGCTGAAGTTTATCCAGCTGCACAACAAATGCTTATTCATCAGGGGAAAGTGCTTAAGGATGACACAACCCTTGAAGACAATAAAGTTGCTGAGAATAGTTTTGTGGTGATCATGCTATCTAAGAGCAAGGTATCATCAGGTGAAGCCTCAACTGCATCATCTGCATCTGCAAAACAGGCAGCTGAACCGGCGAGTTCTTTGCCTCCCACTTCATTGCCATCCACAACATCTCAACCTCCTGCTTCAACTGTAGGACAGGGAGTATCCAATTCTGAGCAAAATCCTGTTACAACTCCTGCCAGTGATGTGGCCGGCATTTATGGCCAAGCAGCATCAAACCTCATTTCAGGAAGCAATTTAGAATCGACTATTCAACAGATTCTAGACATGGGGGGAGGTAGTTGGGATCGAGATACTGTTATCCGTGCTCTTCGTGCAGCGTTTAACAATCCTGAAAGAGCTGTTGAGTAAGCTGAAGTACCAGCAGTTGCCAGAACCCCCGCTATTGGGCAGGCAGCAAACCCTTCAGGTGAGGCTCAGGGTCAAGCTCAGGTTGCACCTACTGGTGGGCCCAACACCAACCCACTCAACCTCTTTCCCCAGGGTATTCCCGATATGGGTGCAAATGAAAATGCGGGCGACTTGGATTTCCTGCGGAACAGTCAACAGTTCCAAGCCCTGAGAGCGATGGTGCAAGCAAATCCCCAGATTTTGCAGCCCATGCTTCAGGAATTGGGTAGACAAAATCCACACCTAATGCAGCTTATCCAAGAGCATCAGGCTGATTTCTTACGCTTGATAAATGAACCTGATGGAGAAGAGAATCTACCAAGTGAGTTGGCTTCTGCAGTGCCCCAGACCATCACTGTCACCCCAGAAGAGAATGAGGCTATTCAAAGGCTTCAAGATATGGGATTTGATAGAGATCTTGTGTTGGAGGTGTTCTTTGCATGCAACAAAAACGAGGACCTGGCAGCCAACTATCTTTTGGATCACCTGAATGAATTTGAAGACTAA 1122 0.467 MKINVKTLKGTHFEIQVQPQDTVADVKRNIEREQGAEVYPAAQQMLIHQGKVLKDDTTLEDNKVAENSFVVIMLSKSKVSSGEASTASSASAKQAAEPASSLPPTSLPSTTSQPPASTVGQGVSNSEQNPVTTPASDVAGIYGQAASNLISGSNLESTIQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYXAEVPAVARTPAIGQAANPSGEAQGQAQVAPTGGPNTNPLNLFPQGIPDMGANENAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGRQNPHLMQLIQEHQADFLRLINEPDGEENLPSELASAVPQTITVTPEENEAIQRLQDMGFDRDLVLEVFFACNKNEDLAANYLLDHLNEFED 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g04368 374 Gene3D - 242 307 IPR036353 GO:0003684|GO:0006289|GO:0043161
Arst4g04368 374 Pfam UBA/TS-N domain 329 365 IPR015940 -
Arst4g04368 374 Pfam UBA/TS-N domain 155 192 IPR015940 -
Arst4g04368 374 FunFam UV excision repair protein RAD23 B 242 307 - -
Arst4g04368 374 SMART CBM 249 292 IPR006636 -
Arst4g04368 374 Gene3D - 322 369 - -
Arst4g04368 374 MobiDBLite consensus disorder prediction 89 136 - -
Arst4g04368 374 CDD Ubl_Rad23 1 74 - -
Arst4g04368 374 FunFam UV excision repair protein RAD23 homolog 321 369 - -
Arst4g04368 374 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 153 196 IPR015940 -
Arst4g04368 374 Gene3D - 1 80 - -
Arst4g04368 374 MobiDBLite consensus disorder prediction 207 243 - -
Arst4g04368 374 PRINTS DNA repair protein Rad23 signature 356 371 IPR004806 GO:0006289
Arst4g04368 374 PRINTS DNA repair protein Rad23 signature 277 299 IPR004806 GO:0006289
Arst4g04368 374 PRINTS DNA repair protein Rad23 signature 324 340 IPR004806 GO:0006289
Arst4g04368 374 PRINTS DNA repair protein Rad23 signature 341 355 IPR004806 GO:0006289
Arst4g04368 374 SUPERFAMILY UBA-like 151 192 IPR009060 GO:0005515
Arst4g04368 374 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Arst4g04368 374 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 363 - -
Arst4g04368 374 MobiDBLite consensus disorder prediction 89 135 - -
Arst4g04368 374 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 328 368 IPR015940 -
Arst4g04368 374 MobiDBLite consensus disorder prediction 209 235 - -
Arst4g04368 374 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Arst4g04368 374 Gene3D - 148 197 - -
Arst4g04368 374 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Arst4g04368 374 Pfam XPC-binding domain 251 306 IPR015360 GO:0003684|GO:0006289|GO:0043161
Arst4g04368 374 SUPERFAMILY UBA-like 312 371 IPR009060 GO:0005515
Arst4g04368 374 SMART uba_6 155 195 IPR015940 -
Arst4g04368 374 SMART uba_6 330 367 IPR015940 -
Arst4g04368 374 FunFam UV excision repair protein RAD23 1 80 - -
Arst4g04368 374 FunFam UV excision repair protein RAD23 homolog 148 196 - -
Arst4g04368 374 SUPERFAMILY XPC-binding domain 248 310 IPR036353 GO:0003684|GO:0006289|GO:0043161
Arst4g04368 374 NCBIfam UV excision repair protein Rad23 1 372 IPR004806 GO:0006289
Arst4g04368 374 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g04368 Arst-Chr4 121522125 121525697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g04368 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 2.05e-06 45.4