Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g04289 ATGGATCCACAACTCAAACCCCAAACCCTAAACTCCACCAGTTTATTCCTTGCTGCCACAACAGCCACCACTCATTCCGAACAACCACCACATTCACTCTCCCTCACCACCGTTCCTTCCACCGTACCACGCTCCAAGCTCATCCCAAACACTCGCTTCCTCGTCGACGCCTTCCGCCACGCCGACACAGCATTCTCCGTCTCCTACTTCCTCTCTCACTTCCACTCCGATCACTACACTGGTCTCTCCAATTCTTGGTCCCGCGGCATTGTCTTCTGCTCCGCCACCACCGCCTCCCTCCTCCAACGAATCCTCGGAGTCCCCGAACGCTTCCTTGTACCCCTTCCCCTTTGCCAGCCCGTTGAAATCGACGGCGCGGAGGTCACGCTGGTCGACGCGAACCACTGCCCTGGCGCGGTCCAGTTCCTATTCAAGGTCCCAACAAAAGAAGAAGGGAAGAAATTCGAGAGGTATGTTCACACTGGCGATTTCAGGTTTTGTAATTCAATGATTTTGGAGCCTGCAATTCTTGATTTCGTTGGCTGTGATGCTGTGTTCTTGGATACTACTTATTGCAACCCAAAGTTTGTGTTTCCTTCGCAAGAGGAGAGTGTTGATTATGTGGTTAGTGTAGTCAAGAGGGTTATTAGTGATTGTGGTGGTGATGGTAGTGGTGTTTTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAAAAGATTTTGGTTGAACTTGCACGGAGAGTGAAGAGGAAGGTGCATGTGGATGCTAGGAAAATGGAGGTCTTGAGGGTGCTTGGGTATGGAGAGAGTGGTGTGTTTACCGAGGACAGTTCAGAGAGTAATATTCATGTTGTTGGCTGGAATGTATTGGGGGAGACATGGCCGTATTTTAAGCCGAATTTCGTAAGGATGAAGGAGATTATGATTGAGAGAGGGTACTCCAAGGTTGTGGGATTTGTGCCAACCGGATGGACTTATGAAGTAAAGTGCAATAGGTTCCCAGTGAGGTCCAAGGATTCGTTTGAGATTCATCTCGTGCCGTATAGCGAGCATTCCAACTACGAGGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAGGCGTGTTGTTCCGACAGTGGGTTTGGATGTTGAGAAAAGCGACAGTAAGCATGCTGACAAAATGAGGAAGTATTTTGCTTTATTGGTTGATGAGACGGCCAACAAGCATGAATTTCTAAAGGGATTTCACCGTGCCACAGGCGACACAGATTTCTTGGTTGAGAAGGATGTTAATGATGGTCAGAAGCCAGGAAAAAACATGGAGGAAGGAATCAAGCCATCTGAGTTGGATGGTGAGGAAAGTACAATTCCGGATGTTGCTGCTAGTGTGCCCTCTTCTACCGGGGAACCGTGTACAGAAGGTGTTACCTTACTAACTGATGAAGAAAAAAAGAAAATGATTGAAGAACTTGGTAATTGTTTGCCGACATGGGTCACTCGAAGCCAAATGTTAGAGCTGATCAGCATCTCAGGGAGCAATGTTGTTGAAGCTGCTTCTAATTTTTATGAACGTGAAACTGAATTTCACAAGCAAGCGTTTTCTTGTCAAACTTCTTCTTTGGTGTCCAAGTGCAGCTCGCTAAATGACATAGATTCTCCTTCAAAAGCTTGCCTGAATTCAAGCAGCACTACCAAAAATATCGATGTTTTTCCAAGCCAGGACTCTACTAAACTAACTATCTTGAAGCATACAGTTCTAAGTCAAGCTTCCTCTGCCAAAAGGAATAAAAGTAGTGGAAGTAAGCCAAACAAGAAAGTAAAAGTCAAAGCAAAGTCACAGTCACAATCAAGTGATCCAAAGCAGTCCACCATAACAAAATTCTTCAGCAAAGTATTGCCTGTGAAGCCTAGTGTTGCTCAGTCTGATCGTTCTGAATTGATGATTGGCGTAAGCCCTAAAGCCAAAAATATGTTGCCAGATGATGTTGGAAATCAGTACAAGGATGAGATTGATCAGTTAACTATAATTGAGAAGGCAAAAGGAGATGTAAATAAGGCATTGGATATATATTACTGTAATTCTGGAAATCTTGGTGAAAAGGAAATTTCAGTTCAAGCAGAGTGTAAAATTGATAGCTCTTTAGAGAAGAATTGTGTGTTACATGAATTGAAAGGTATTCCTGACACCACTATGAAGAGAAATCATGTAACTCTACCACTTGAGAAATACAATCCTAAAGAGCATGCGTGTTGGAAAGATGGGCAGCCTGCACCATATTTACATCTTGCACGAACCTTCAGCCTTCTGGAGGATGAGAAAGGAAAGATTAAGGCTTCTTCAATGATATGCAATACGTTCCGAAGTTTGCTGGCCTTGTCTCCAGCAGATGTGCTGCCTGCTGTGTACCTATGTACAAACAAAATTGCGGCAGACCATGAAAAAATGGAACTAAACATTGGTGGAAGTATAGTTACTGCAGCACTTGAAGAGGCATGCGGAACAAATCGATCCAAAATAAGGGAGATGTATAACAAATTTGGCGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCAACACCACTTCTGATTAAGGATGTTTTCTCTGCACTGCAAAAGATAAGTTTACAAACAGGCCATGGAAGCACATCTCGGAAGAAAGGCATTATCATTAGTCTCATGCGTTCCTGTCGTGAGAAGGAGATTAAATTTCTTGTTCGGACCTTGGTCAGGAACTTAAGGATTGGGGCAATGCTTAGAACTGTTTTACCTGTCCTTTCTGTGGAAATTGTTGAAGCATATAACATAATTCCGAATTTGGATCTCATAGTTCCATCTCTCATGAACAAAGGAATTGATTTTTCGGTTTCAAGTTTGTCAATGGTTCCTGGAATTCCTATTAAGCCTATGCTTGCAACGATCACCAATGGCATTCCCAAAGCATTGAACCTATTTCAAAATAAGGCATTTACTTGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTAATTGATGGATCAATTCGTGTTTTTTCAAGAAATGGAGATGAATCAACATCAAGATTTCCTGATCTTATTGACATAATTAAGGAATTCTGCAAGCCTGTTGCATCGACTTTCATAATTGATGCTGAAGTTGTTGGTATTGATAGAAAAAATGGAATTAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGTAAAGGAAGCAAAGATACTCTAGTTACTACAGAGAGCATAAAGGTGGATATTTGCATATTTGTCTTTGATATCATGTTTGCAAATGGAGAGCAGCTATTGGGTTTTCCTCTTCGCACAAGACGGAAATATCTAAAGGATTTGTTATGTGATGAAAAACCAGGGTATTTTGAATATGCAAAGGAAATAACAATTGAAGCAGACAAGGCTTGCGAAACTTGTAAAACCACATTAACCAAGATAAATGCTTTCTTGGAAGATGCTCTTCGTTCTTCCTGTGAAGGAATTATGGTGAAAACATTGGATGTAGATGCTGGTTATTCTCCGTCAAAGCGTTCTGATAAATGGTTAAAGGTCAAACGAGATTATGTCGAAGGTTTAAATGATTCTCTTGATTTGGTGCCCATTGGAGCTTGGCATGGAAATGGAAGGAAGGCCGGATGGTATAGTCCATTTCTCATGGCATGTTATAATCCTGAAACTGAGGAATATCAAAGCGTGTGCCGTGTGATGTCTGGGTTCTCAGATTCGTTTTACAAAGAGATGAAAGAATTCTTCTCTGAGGACAACGTCTTATCCAAAAAGCCGCTGTATTATCGAACAGCAGAGGAGCCCGACATGTGGTTTTGTCCGCAACTTGTTTGGGAGATACGAGGTGCAGACTTCACGGTGTCCCCTGTTCATCATGCAGCGATCGGTTTAATTCATCCGACTCGGGGCATCTCAATACGGTTTCCGAGATTTATTAGCCGTGTGTTGGATAGGAACCCAGAAGAGTGTACTACAGCAGCAGATATTGTTGATTTGTTTAATTCTCAGACAAGGAAGATGGATGTCACAGCTGAAGATTGA 4062 0.4259 MDPQLKPQTLNSTSLFLAATTATTHSEQPPHSLSLTTVPSTVPRSKLIPNTRFLVDAFRHADTAFSVSYFLSHFHSDHYTGLSNSWSRGIVFCSATTASLLQRILGVPERFLVPLPLCQPVEIDGAEVTLVDANHCPGAVQFLFKVPTKEEGKKFERYVHTGDFRFCNSMILEPAILDFVGCDAVFLDTTYCNPKFVFPSQEESVDYVVSVVKRVISDCGGDGSGVLFLVATYVIGKEKILVELARRVKRKVHVDARKMEVLRVLGYGESGVFTEDSSESNIHVVGWNVLGETWPYFKPNFVRMKEIMIERGYSKVVGFVPTGWTYEVKCNRFPVRSKDSFEIHLVPYSEHSNYEELREYVKFLKPRRVVPTVGLDVEKSDSKHADKMRKYFALLVDETANKHEFLKGFHRATGDTDFLVEKDVNDGQKPGKNMEEGIKPSELDGEESTIPDVAASVPSSTGEPCTEGVTLLTDEEKKKMIEELGNCLPTWVTRSQMLELISISGSNVVEAASNFYERETEFHKQAFSCQTSSLVSKCSSLNDIDSPSKACLNSSSTTKNIDVFPSQDSTKLTILKHTVLSQASSAKRNKSSGSKPNKKVKVKAKSQSQSSDPKQSTITKFFSKVLPVKPSVAQSDRSELMIGVSPKAKNMLPDDVGNQYKDEIDQFXTIIEKAKGDVNKALDIYYCNSGNLGEKEISVQAECKIDSSLEKNCVLHELKGIPDTTMKRNHVTLPLEKYNPKEHACWKDGQPAPYLHLARTFSLLEDEKGKIKASSMICNTFRSLLALSPADVLPAVYLCTNKIAADHEKMELNIGGSIVTAALEEACGTNRSKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISLQTGHGSTSRKKGIIISLMRSCREKEIKFLVRTLVRNLRIGAMLRTVLPALAQAVVMNSFPTVQQEGTSENLKEKLQVLSVEIVEAYNIIPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLATITNGIPKALNLFQNKAFTCEYKYDGQRAQIHRLIDGSIRVFSRNGDESTSRFPDLIDIIKEFCKPVASTFIIDAEVVGIDRKNGIRIMSFQELSSRGKGSKDTLVTTESIKVDICIFVFDIMFANGEQLLGFPLRTRRKYLKDLLCDEKPGYFEYAKEITIEADKACETCKTTLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYKEMKEFFSEDNVLSKKPLYYRTAEEPDMWFCPQLVWEIRGADFTVSPVHHAAIGLIHPTRGISIRFPRFISRVLDRNPEECTTAADIVDLFNSQTRKMDVTAED 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g04289 1382 ProSiteProfiles ATP-dependent DNA ligase family profile. 1110 1257 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Arst4g04289 1382 Pfam DNA ligase N terminus 753 929 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Arst4g04289 1382 FunFam DNA ligase 1028 1159 - -
Arst4g04289 1382 Pfam ATP dependent DNA ligase domain 999 1219 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Arst4g04289 1382 Gene3D DNA ligase/mRNA capping enzyme 1028 1159 - -
Arst4g04289 1382 Gene3D - 730 1001 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Arst4g04289 1382 MobiDBLite consensus disorder prediction 422 446 - -
Arst4g04289 1382 NCBIfam ATP-dependent DNA ligase 811 1369 IPR000977 GO:0003910|GO:0005524|GO:0071897
Arst4g04289 1382 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1023 1031 IPR016059 GO:0003909
Arst4g04289 1382 Gene3D - 197 351 - -
Arst4g04289 1382 FunFam DNA ligase 1224 1381 - -
Arst4g04289 1382 SUPERFAMILY Nucleic acid-binding proteins 1228 1372 IPR012340 -
Arst4g04289 1382 Gene3D - 1224 1381 IPR012340 -
Arst4g04289 1382 CDD Adenylation_DNA_ligase_I_Euk 990 1222 - -
Arst4g04289 1382 FunFam DNA ligase 197 351 - -
Arst4g04289 1382 Pfam ATP dependent DNA ligase C terminal region 1245 1348 IPR012309 GO:0003910|GO:0006281|GO:0006310
Arst4g04289 1382 MobiDBLite consensus disorder prediction 585 614 - -
Arst4g04289 1382 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 955 1221 - -
Arst4g04289 1382 Gene3D - 1010 1223 - -
Arst4g04289 1382 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 284 1375 - -
Arst4g04289 1382 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 284 1375 - -
Arst4g04289 1382 Pfam DNA repair metallo-beta-lactamase 271 374 IPR011084 -
Arst4g04289 1382 SUPERFAMILY Metallo-hydrolase/oxidoreductase 49 374 IPR036866 -
Arst4g04289 1382 Gene3D - 48 373 IPR036866 -
Arst4g04289 1382 CDD OBF_DNA_ligase_I 1228 1371 - -
Arst4g04289 1382 CDD SNM1A-1C-like_MBL-fold 30 194 - -
Arst4g04289 1382 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 734 982 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g04289 Arst-Chr4 120967043 120974685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g04289 738 1372 Core DNA Replication Machinery Family AT1G08130 38.619 1.35e-162 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g04289 - - aip:107635689 2542.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g04289 4 120967043 120974685 Arst4g04289 4 120967043 120974685 ECH