LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g04109	ATGTTTATGTCTTCTCTCCTTTGGAGCTGCATTGCTATGTGTGTTTCACTTGCACTTGCACTTCCACACCCTTCTTCTTCTGCTTCTTCTTCTTCACACCAACCTCTTAAGATTACTCGCTTACCAGGTCAACCCCATGTTGAGTTTCAACAGTTTTCAGGTTATGTTACTGTTGATAACAGCAACAACAAAGCACTTTTCTTCTACTTTGTTGAAGCTCAAAAGGATGCACCTTCCAAACCCCTTGTTCTTTGGCTCAATGGAGGGCCTGGTTGTTCTTCTATTGGAGTTGGTGCATTTTCTGAAAATGGACCATTTAGGCCAAAAGGAGAGGCCTTGGTGAGGAACCAATTCAGCTGGAACAGAGAAGCAAATGTTTTGTACTTGGAAACACCAATTGGAGTTGGATTCTCTTATTCAAAAGATACTTCCTCTTATGTGGGTGTAAATGACAAGATCACAGCCAGGGATAACTTAATATTCTTGCAAAACTGGTTTGTAAAGTTCCCACACTACAGAAACAGAAGTTTGTTCATAGTAGGAGAAAGCTATGCTGGCCACTATGTTCCTCAACTTGCTGAGCTTATGCTAGAATTCAACAGAAAAGAGAAGTTGTTCAATTTAAAAGGCATTGCTCTTGGCAACCCAGTTCTTGAATTCGAAACAGATTTCAATTCAAGAGCTGAGTTCTTCTGGTCACATGGACTAATCTCAGATGTAACATTTCAAATGTTCACATCTGTGTGTAACTATTCAAGATATGTGAGGGAATATTATAGTGGTGCTGTTTCTCCTATGTGTTCAAGGGTTATGAGCCAAGTTAGCACAGAAACCAGTAGATTCGTCGACAAGTATGATGTTACACTTGATGTTTGTATATCTTCAGTGTTTTCACAAACCAAGGTCCTCAATCCTCAGCAAGTTACCGAAACCATAGACGTGTGCGTTGAAGATGAAACGGTGAATTATCTGAACAGGAAGGATGTTCAGTCGGCTTTGCATGCGCGACTGGTCGGAGTAACAAGATGGTCTGCTTGCAGCAATGTACTAGATTATGAGCTGCGCGATTTGGAGATACCAACAATCACAGTTGTTGGTAAATTAGTCAAGGCAGGAATACCAGTCTTGGTCTACAGTGGTGATCAGGATTCAGTTATACCATTGACTGGAAGTAGAAAATTAGTGCACCAATTGGCAAGAAAACTGAGGCTGAGAACCACTGTGCCATACAGGGTCTGGTTTGAGGGGGAGCAGGTGGGTGGCTGGACTCAAGTTTATGGTAATATCCTTTCATTTGCCACCATTAGAGGAGCATCACATGAAGCTCCATTTTCACAGCCTAAGAGATCACTTGTGCTGTTCAAGTCCTTCTTAGAGGGTCGACCTCTACCTGAAGAATTTTAA	1404	0.4174	MFMSSLLWSCIAMCVSLALALPHPSSSASSSSHQPLKITRLPGQPHVEFQQFSGYVTVDNSNNKALFFYFVEAQKDAPSKPLVLWLNGGPGCSSIGVGAFSENGPFRPKGEALVRNQFSWNREANVLYLETPIGVGFSYSKDTSSYVGVNDKITARDNLIFLQNWFVKFPHYRNRSLFIVGESYAGHYVPQLAELMLEFNRKEKLFNLKGIALGNPVLEFETDFNSRAEFFWSHGLISDVTFQMFTSVCNYSRYVREYYSGAVSPMCSRVMSQVSTETSRFVDKYDVTLDVCISSVFSQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALHARLVGVTRWSACSNVLDYELRDLEIPTITVVGKLVKAGIPVLVYSGDQDSVIPLTGSRKLVHQLARKLRLRTTVPYRVWFEGEQVGGWTQVYGNILSFATIRGASHEAPFSQPKRSLVLFKSFLEGRPLPEEF	467

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g04109	467	Gene3D	-	362	460	-	-
	Arst4g04109	467	SUPERFAMILY	alpha/beta-Hydrolases	39	464	IPR029058	-
	Arst4g04109	467	FunFam	Carboxypeptidase	361	460	-	-
	Arst4g04109	467	PRINTS	Carboxypeptidase C serine protease (S10) family signature	430	443	IPR001563	GO:0004185\|GO:0006508
	Arst4g04109	467	PRINTS	Carboxypeptidase C serine protease (S10) family signature	129	139	IPR001563	GO:0004185\|GO:0006508
	Arst4g04109	467	PRINTS	Carboxypeptidase C serine protease (S10) family signature	165	190	IPR001563	GO:0004185\|GO:0006508
	Arst4g04109	467	PRINTS	Carboxypeptidase C serine protease (S10) family signature	116	128	IPR001563	GO:0004185\|GO:0006508
	Arst4g04109	467	Gene3D	-	315	351	-	-
	Arst4g04109	467	Gene3D	alpha/beta hydrolase	34	294	IPR029058	-
	Arst4g04109	467	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	38	447	IPR001563	GO:0004185\|GO:0006508
	Arst4g04109	467	ProSitePatterns	Serine carboxypeptidases, histidine active site.	430	447	IPR033124	GO:0004185
	Arst4g04109	467	ProSitePatterns	Serine carboxypeptidases, serine active site.	179	186	IPR018202	GO:0004185
	Arst4g04109	467	FunFam	Carboxypeptidase	31	464	-	-
	Arst4g04109	467	Pfam	Serine carboxypeptidase	43	460	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g04109	Arst-Chr4	119463513	119466797	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst4g04109	323	463	Calmodulin-binding Proteins	AT2G22960	28.369	4.13e-15	71.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst4g04109	4	119463513	119466797	Arst4g04109	4	119463513	119466797	ECH