LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g03992	ATGGGGACTCCAAGTGGAAGAGCAAGTGGAAGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGTTCTTCTTCTTCCATGTTCTGTTGCATTTTTCTTGTTTTTTAGCACTGCAACTGCTTTGCTTTCTCCCAAAGGAGTAAACTTTGAAGTTCAAGCTTTAATGGGGATAAAGAACTCACTGGTGGATCCTCATGGTGTTTTGGATAATTGGGATGCTGATGCTGTTGATCCTTGTAGCTGGACTATGGTTACTTGTTCTGCAGAGAACTTGGTGATTGGATTGGGTACTCCAAGTCAAAGTTTATCTGGTACTCTTTCTCCAACCATAGGAAACTTAACCAACCTTCAGATTGTGTTGCTTCAGAATAACAACATAACTGGACCAATCCCTTCAGAGTTGGGAAAACTTCCTAAGCTTCAAACTCTTGATCTCTCTAACAACTTCTTCAGTGGTGAAATTCCCCCTTCACTTGGCCACTTGAGAAGTTTGCAATACATGAGGCTCAATAATAACAGTCTTCATGGTGAATTGCCAGAATCATTGGCTAATATGACACAGCTTGCTTTTCTTGACTTGTCCTACAACAATATCAGTGGCCCTATACCAAGGATTTTAGCTAAATCCTTCAACATTGTTGGAAATCCCCTTGTTTGTGCAACTGGAAAAGAACCAAACTGCCATGGCTTGACACTAATGCCAATGTCCATGAACTTAAATGGCACTGAAGATGCCTTACCATCAAGCAAACCAAAATCTCATAAAATGGCAATTGCTTTTGGCTTGAGTCTTGGATGTCTCTGCCTCATAGTTCTCGGTTTCGGCCTTGTTCTTTGGTGGAGGCACAAGCACAATCAACAAGCATTCTTTGATGTTAAAGACCGGCATCACGAAGAAGTATACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAAGTTGCTACCAATAACTTCAGCAGCAAGAACATTCTTGGAAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCTCTGATAGCACTCTTGTAGCTGTCAAGAGGCTGAAAGATGGCAATGCCATTGGAGGAGAGATTCAGTTTCAGACTGAAGTCGAAATGATCAGCCTCGCCGTCCACCGGAACCTCCTCAGACTCTATGGATTCTGCATGACACCAACAGAAAGGCTCTTAGTTTACCCTTACATGTCCAATGGCAGCGTCGCTTCACGTCTAAAGGGTAAGCCGGTGTTGGATTGGGGAACAAGGAAGAACATTGCATTAGGAGCAGCAAGGGGGCTATTATATCTTCATGAACAATGTGATCCAAAGATAATACATAGGGATGTGAAGGCTGCAAACATATTGCTTGATGACTATTGTGAAGCAGTGGTTGGTGATTTTGGGTTGGCAAAGCTTCTGGATCATCAAGATTCACATGTCACAACTGCAGTTAGAGGCACTGTAGGACACATAGCCCCAGAGTATCTATCTACAGGACAATCATCTGAGAAAACTGATGTGTTTGGATTTGGGATTCTCCTCTTGGAATTGATCACAGGACAAAGGGCACTAGAGTTTGGAAAAGCTGCTAACCAAAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAGGAGAAGAAGCTAGAGTTGCTTGTGGACAAGGATCTTAAAGGGAACTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTAGCATTGTTATGTACTCAAAACCTTCCAGGGCATAGACCAAAGATGTCTGAAGTTGTAAGAATGCTTGAAGGTGATGGATTAGCAGAGAGATGGGAAGCTTCACAAAGAGCTGATACTAGTGCTGCTGCTACTGCTACTACTAACACTTCAAAATCCAAACCTCATGAATCATCTTTATCAGATAGGTATTCTGATCTCACTGATGATTCCTTGTTGTTAGTCCAAGCCATGGAGCTATCAGGACCAAGGTGA	1956	0.4269	MGTPSGRASGRGRGRGRGGGGGVLLLPCSVAFFLFFSTATALLSPKGVNFEVQALMGIKNSLVDPHGVLDNWDADAVDPCSWTMVTCSAENLVIGLGTPSQSLSGTLSPTIGNLTNLQIVLLQNNNITGPIPSELGKLPKLQTLDLSNNFFSGEIPPSLGHLRSLQYMRLNNNSLHGELPESLANMTQLAFLDLSYNNISGPIPRILAKSFNIVGNPLVCATGKEPNCHGLTLMPMSMNLNGTEDALPSSKPKSHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQVATNNFSSKNILGKGGFGNVYKGVLSDSTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKGNYDRIELEEMVQVALLCTQNLPGHRPKMSEVVRMLEGDGLAERWEASQRADTSAAATATTNTSKSKPHESSLSDRYSDLTDDSLLLVQAMELSGPR	651

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g03992	651	Gene3D	Ribonuclease Inhibitor	48	230	IPR032675	-
	Arst4g03992	651	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	440	452	IPR008271	GO:0004672\|GO:0006468
	Arst4g03992	651	ProSitePatterns	Protein kinases ATP-binding region signature.	327	349	IPR017441	GO:0005524
	Arst4g03992	651	ProSiteProfiles	Protein kinase domain profile.	321	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst4g03992	651	Pfam	Leucine rich repeat N-terminal domain	51	88	IPR013210	-
	Arst4g03992	651	SUPERFAMILY	L domain-like	51	213	-	-
	Arst4g03992	651	Pfam	Leucine Rich repeats (2 copies)	115	155	IPR025875	-
	Arst4g03992	651	Gene3D	Phosphorylase Kinase; domain 1	290	397	-	-
	Arst4g03992	651	Gene3D	Transferase(Phosphotransferase) domain 1	398	610	-	-
	Arst4g03992	651	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	31	601	-	-
	Arst4g03992	651	Pfam	Protein kinase domain	322	587	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst4g03992	651	SMART	serkin_6	321	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst4g03992	651	SUPERFAMILY	Protein kinase-like (PK-like)	298	591	IPR011009	-
	Arst4g03992	651	MobiDBLite	consensus disorder prediction	605	622	-	-
	Arst4g03992	651	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	48	230	-	-
	Arst4g03992	651	MobiDBLite	consensus disorder prediction	601	631	-	-
	Arst4g03992	651	FunFam	Somatic embryogenesis receptor-like kinase 1	398	610	-	-
	Arst4g03992	651	FunFam	Somatic embryogenesis receptor kinase 1	290	397	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g03992	Arst-Chr4	118465120	118469187	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst4g03992	23	651	Receptor kinase-like Gene Family	AT5G16000	76.995	0.0	1007

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Arst4g03992		Pkinase	5.9e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst4g03992	-		-	gmx:100798412	1108.59