Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03930 ATGGGTTCAGAGAGAGGGTGGAAGAAAGGGCCATGGACTCATGAAGAGGACAAGTTGCTCACTGAATATGTCACCTTGCATGGGGAGGGTAGGTGGAGTTCTGTGGCCAAGTTCACAGGTTTAAATAGGAGTGGCAAAAGTTGCAGGTTGAGATGGGTGAATTATTTGAGGCCTGGTCTCAAGAAGGGTCAATTAACACCACTGGAAGAAGGAATAATATTTGAATTGCATGCTATTTTGGGAAACAAGTGGTCAACAATAGCAAGGTACTTGCCAGGTAGAACTGATAATGAGATCAAGAACTATTGGAGAACCCACTTCAAAAAGAAAGAGGATTCCAAGCATAACAAGAAGCTAAAAGAGAGAAGATCAAAGGTCACAAAAGAGCAAGTAATAATGGAGGACACCAACAAAAGTAATAATAATGAAAATACCAAATCCTATGATGATGAGACAAAAGAAAACTACTACAATGATCAACACAATAATATGGGGTTTATTTACCCTAATAATAATAATCCAACAATGTTAGAGCAGCAACAAAGCTTCCCTTTGATGCACCAAGATTATTTGTCATCACCTTCATGGCCAGACACTACAACAGCAGATTATCATGCCTTGTGGTTTAGTTTATGGGACTTTGATGTACCACAGGGCTTTGAAGAACATGTTAACAACCTCACCAAATATGTGCTCCCAAACCAAGCTACCTTTGGTGATGTTTTTCACAATACTTTTTTAGTTTGA 747 0.3909 MGSERGWKKGPWTHEEDKLLTEYVTLHGEGRWSSVAKFTGLNRSGKSCRLRWVNYLRPGLKKGQLTPLEEGIIFELHAILGNKWSTIARYLPGRTDNEIKNYWRTHFKKKEDSKHNKKLKERRSKVTKEQVIMEDTNKSNNNENTKSYDDETKENYYNDQHNNMGFIYPNNNNPTMLEQQQSFPLMHQDYLSSPSWPDTTTADYHALWFSLWDFDVPQGFEEHVNNLTKYVLPNQATFGDVFHNTFLV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03930 248 CDD SANT 66 107 IPR001005 -
Arst4g03930 248 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Arst4g03930 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Arst4g03930 248 FunFam Myb transcription factor 9 61 - -
Arst4g03930 248 SMART sant 8 58 IPR001005 -
Arst4g03930 248 SMART sant 61 109 IPR001005 -
Arst4g03930 248 Gene3D - 64 161 - -
Arst4g03930 248 CDD SANT 11 56 IPR001005 -
Arst4g03930 248 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Arst4g03930 248 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Arst4g03930 248 Gene3D - 8 61 - -
Arst4g03930 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Arst4g03930 248 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 6 184 - -
Arst4g03930 248 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Arst4g03930 248 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03930 Arst-Chr4 117993218 117994917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03930 6 215 MYB Transcription Factor Family AT3G30210 53.555 8.41e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst4g03930 Myb_DNA-binding 3.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03930 K09422 - gmx:100785540 280.026