LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g03912	ATGTTTCTCAAATGTTTACGCTTTGCTGATTCAAAGAAGGGGGGAAAATATCCAATAGTAATAGAAGAGCAATGCCATCATTTTTCATTTGAAGCTCTTAGAAAGGCAACCAACGACTTTGACGAGAAACTTCAAATTGGAGAAGGAGGCTTTGGTAAGTTTTACAAAGGTTGTCTCAAACATAATAATGGTGATGCAAGTGATCATACGATCGCATTGAAGGTGATGCCTATTTGGATGTCCCATGAATATTATGAGTTCAAGAAGGAAATTGAGATGCTATGTGAGCTTCGTCACACAAATATAATCTCCCTTATAGGCTTCTGCTACCGAAAACAGAAACGTATTGTTGTATATGAGTACATGGTGAATGGATCACTCCATGATTACTTGAATAATAAGAACAAAGAACCACTGTCATGGAAGAAGAGACTAGAGATCTGCATCGGAGTAGCACGTGCTCTACACTACCTTCACACTGGAGCCAATCGTTGTTGTATCATTCATCGTGACATAAAACCTCATAACATTCTATTGGATGGGAATATGGTTCCCAAAATCTCGGGTTTTGAGTTATCATTGTACGGAGCGCTCTCTGCATCAAAGGAAAAGAAAATTGAAGTAGATTGCGTTGCAGGCACAGTTGGATACATTGCTCCTGAACACATCTGGCATGGTTATGTCACTGATAAAAGTGATGTTTTCTCCTTTGGTATGGTTCTGCAATTCGTGATGGGCCACAATGTGTCGTGCTTCAAACATGATGCCGACACTCTTGAGGAGACAATAGATCCAAATCTGAATGGGAAGATTGCACCAGAATGTTGGCAGGTATTCACTAGTGTCATACAGAGATGCTTGCAGCATGAACCAGATGAGCGACCTACAATGGGCGAAGTTGAGATATTGCTTGAGAATGCTCTCTCATTGCAGGAACAAGCTGATATTACAAACACCAATGCTGCTCACTATACTTTATTATCCACTACTTGTTTGTCCCATATATTTTCACGTTGTATAAGTAATGGTCTTCTGACCTTTGATGCTTCAATGGAGGAGGAAGGCTCTTTCTCAGACGTAAGTAGTGACTAA	1092	0.402	MFLKCLRFADSKKGGKYPIVIEEQCHHFSFEALRKATNDFDEKLQIGEGGFGKFYKGCLKHNNGDASDHTIALKVMPIWMSHEYYEFKKEIEMLCELRHTNIISLIGFCYRKQKRIVVYEYMVNGSLHDYLNNKNKEPLSWKKRLEICIGVARALHYLHTGANRCCIIHRDIKPHNILLDGNMVPKISGFELSLYGALSASKEKKIEVDCVAGTVGYIAPEHIWHGYVTDKSDVFSFGMVLQFVMGHNVSCFKHDADTLEETIDPNLNGKIAPECWQVFTSVIQRCLQHEPDERPTMGEVEILLENALSLQEQADITNTNAAHYTLLSTTCLSHIFSRCISNGLLTFDASMEEEGSFSDVSSD	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g03912	363	Pfam	Protein tyrosine and serine/threonine kinase	45	300	IPR001245	GO:0004672\|GO:0006468
	Arst4g03912	363	SUPERFAMILY	Protein kinase-like (PK-like)	19	300	IPR011009	-
	Arst4g03912	363	Gene3D	Phosphorylase Kinase; domain 1	7	121	-	-
	Arst4g03912	363	Gene3D	Transferase(Phosphotransferase) domain 1	122	330	-	-
	Arst4g03912	363	PRINTS	Tyrosine kinase catalytic domain signature	161	179	IPR001245	GO:0004672\|GO:0006468
	Arst4g03912	363	PRINTS	Tyrosine kinase catalytic domain signature	119	132	IPR001245	GO:0004672\|GO:0006468
	Arst4g03912	363	PRINTS	Tyrosine kinase catalytic domain signature	275	297	IPR001245	GO:0004672\|GO:0006468
	Arst4g03912	363	PRINTS	Tyrosine kinase catalytic domain signature	232	254	IPR001245	GO:0004672\|GO:0006468
	Arst4g03912	363	ProSiteProfiles	Protein kinase domain profile.	40	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst4g03912	363	FunFam	Os07g0541700 protein	122	214	-	-
	Arst4g03912	363	PANTHER	OS07G0166700 PROTEIN	24	311	IPR045272	GO:0004714\|GO:0006468
	Arst4g03912	363	SMART	serkin_6	40	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst4g03912	363	FunFam	receptor-like protein kinase FERONIA	9	121	-	-
	Arst4g03912	363	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	167	179	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g03912	Arst-Chr4	117848338	117849825	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst4g03912	25	329	Receptor kinase-like Gene Family	AT5G38990	41.975	8.63e-68	227

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Arst4g03912		PK_Tyr_Ser-Thr	9.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst4g03912	-		-	adu:107486591	756.133