Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst4g03852 | ATGGATGAACAACATCATAAAAGGATCTTTGTTGTTCTTCATCAAGTGGTGGTGATTTTGTTGGTGATGGTGGTGGTGGTGGGACCAAGTAGTTGTGTTAAAGGAGGAGAAGAAGAAGATAGGATCTTGGAACTTCCTGGTCAACCAAAGGTGTCTTTTCAACAGTTTTCTGGCTATGTTACTGTCAACAAGGTTGCCGGTAGAGCACTCTTCTACTGGCTCACTGAATCTTCTCAAAACTCACTCAGAAAACCCCTTGTTATTTGGCTCAATGGAGCAAAAGACTCTCTGGAATTTGTAGTCCAATGGCTAGAAAGGTTCCCACGCTATAAAAATAGGGAGCTTTACATCACTGGAGAGAGCTATGCTGGCCATTATGTGCCTCAACTAGCTAGAGAAATTATCACTTATAACACCAACACTAAGTATCCCATCAATCTCAAAGGAATCATGGTTGGAAATGCAGTAACAGACAACTATTATGACAACTTAGGAACAGTGACATATTGGTGGAGCCATGCAATGATCTCTGACCAGACTTACAGGCAACTCATAAGCACTTGTGACTTCCACAGGCAGAAGGAATCTGATGAGTGTGAGTCTCTATATAGTTATGCCATGGATCAAGAATTCGGAAACATTGATCAGTACAACATCTATGCACCTCCTTGTAACAACTCCGACGGCAGCGCCGCCACCTCCCGCCGTGCCATGCGCCTACCCCATCGCCCCCATCATCCGGCAGTCAGGCAATTGTCCGGGTATGATCCATGTACGGAAAAGTATGCAGAGATATACTACAATAGACCAGATGTTCAGAAAGCACTTCATGCTAACACTACTGGAATTCCTTATAAGTGGACTGCTTGCAGTGAGGTTTTGAATCGAAACTGGAATGATACAGATGTATCAGTGCTACCAATTTATAGACAGTTGATGGCCAACAGAATACGAGTTTGGGTGTTCAGTGGAGACGTAGATTCAGTGGTGCCGGTTACAGCAACTAGATATGCACTTGCACAGCTTAAGGTGGCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACTGAAGTATATGAAGGGCTAACATTTGCGACAGTGAGAGGGGCAGGTCATGAAGTTCCATTATTCAAGCCAAGAGCAGCTCTTCAGTTATTTAAATCATTTCTTTCAGGAAGTCCTCTCCCTAAGTCCTAA | 1218 | 0.4368 | MDEQHHKRIFVVLHQVVVILLVMVVVVGPSSCVKGGEEEDRILELPGQPKVSFQQFSGYVTVNKVAGRALFYWLTESSQNSLRKPLVIWLNGAKDSLEFVVQWLERFPRYKNRELYITGESYAGHYVPQLAREIITYNTNTKYPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLISTCDFHRQKESDECESLYSYAMDQEFGNIDQYNIYAPPCNNSDGSAATSRRAMRLPHRPHHPAVRQLSGYDPCTEKYAEIYYNRPDVQKALHANTTGIPYKWTACSEVLNRNWNDTDVSVLPIYRQLMANRIRVWVFSGDVDSVVPVTATRYALAQLKVATKIPWYPWYVKNQVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLSGSPLPKS | 405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst4g03852 | 405 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 369 | 382 | IPR001563 | GO:0004185|GO:0006508 | |
| Arst4g03852 | 405 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 103 | 128 | IPR001563 | GO:0004185|GO:0006508 | |
| Arst4g03852 | 405 | PANTHER | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | 43 | 93 | IPR001563 | GO:0004185|GO:0006508 | |
| Arst4g03852 | 405 | SUPERFAMILY | alpha/beta-Hydrolases | 44 | 403 | IPR029058 | - | |
| Arst4g03852 | 405 | FunFam | Carboxypeptidase | 254 | 402 | - | - | |
| Arst4g03852 | 405 | Gene3D | - | 258 | 295 | - | - | |
| Arst4g03852 | 405 | Gene3D | - | 305 | 399 | - | - | |
| Arst4g03852 | 405 | FunFam | Carboxypeptidase | 305 | 399 | - | - | |
| Arst4g03852 | 405 | Gene3D | alpha/beta hydrolase | 36 | 93 | IPR029058 | - | |
| Arst4g03852 | 405 | Gene3D | alpha/beta hydrolase | 94 | 226 | IPR029058 | - | |
| Arst4g03852 | 405 | ProSitePatterns | Serine carboxypeptidases, histidine active site. | 369 | 386 | IPR033124 | GO:0004185 | |
| Arst4g03852 | 405 | Pfam | Serine carboxypeptidase | 47 | 92 | IPR001563 | GO:0004185|GO:0006508 | |
| Arst4g03852 | 405 | Pfam | Serine carboxypeptidase | 93 | 399 | IPR001563 | GO:0004185|GO:0006508 | |
| Arst4g03852 | 405 | ProSitePatterns | Serine carboxypeptidases, serine active site. | 117 | 124 | IPR018202 | GO:0004185 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst4g03852 | Arst-Chr4 | 117270251 | 117279139 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst4g03852 | 263 | 402 | Calmodulin-binding Proteins | AT2G22960 | 31.915 | 2.79e-16 | 74.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst4g03852 | K16297 | - | gmx:100807680 | 598.201 |