Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03850 ATGGCGTTCCTCAATAGAATGGGAAGCCTACTGAAGCAATCTGCTGTCAGGCACATCAATCAAGAGTTGTCTGGATCAAAACCTTCGATTTTCCAGGCTATTCGATCCATGTCATCTTCAAAGCTTTTCATCGGAGGTATTTCATATAGCACAGATGAGATGAGTCTGCGGGAGGCTTTTGCACGCTATGGAGAAGTAGTTGATGCAAGGGTCATTATGGACCGTGAAACTGGAAGGTCCAGAGGTTTTGGATTCATAACTTTTGCAACAACTGAGGATGCATCTTCTGCCATTCAAGCCATGGATGGCCAGGATCTTCATGGTCGGAGAATACGTGTGAACTATGCTGCAGAAAAATCACGTCCAGGATTCGGCGGTGGTGGTGGCTATGGCGGTGGTGGTGGCTATGGAGGTGGTGGCTATGGCGGTGGTAATTTCGGTGGTAATGATAATAGTGGTGGAAGTTATGGAGGTGGTGGATATGGTGCCCCAGCAAGCTATGGCAGTGGCAGCACTCAAACTAGTTTCGCAGATAGCGGTGCTAGTAATTTCCAATTCAATGATAACTCTGGCGGAGATCTTCCCTCTGGTGGAGGCAATACGGGTTTGGGATTTGATCATGAGTTTGATGAACAAAAGGACAGAACAGATGGGGAGTTTCAAGACAACAATCTGAGGGAAAACAATGATGAATCCAGTGATATCGCACAGAACCGTGGGTGA 723 0.4703 MAFLNRMGSLLKQSAVRHINQELSGSKPSIFQAIRSMSSSKLFIGGISYSTDEMSLREAFARYGEVVDARVIMDRETGRSRGFGFITFATTEDASSAIQAMDGQDLHGRRIRVNYAAEKSRPGFGGGGGYGGGGGYGGGGYGGGNFGGNDNSGGSYGGGGYGAPASYGSGSTQTSFADSGASNFQFNDNSGGDLPSGGGNTGLGFDHEFDEQKDRTDGEFQDNNLRENNDESSDIAQNRG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03850 240 MobiDBLite consensus disorder prediction 167 196 - -
Arst4g03850 240 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 169 - -
Arst4g03850 240 MobiDBLite consensus disorder prediction 167 240 - -
Arst4g03850 240 Gene3D - 17 173 IPR012677 -
Arst4g03850 240 SMART rrm1_1 41 114 IPR000504 GO:0003723
Arst4g03850 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Arst4g03850 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Arst4g03850 240 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 191 - -
Arst4g03850 240 CDD RRM2_NsCP33_like 41 116 - -
Arst4g03850 240 MobiDBLite consensus disorder prediction 206 234 - -
Arst4g03850 240 SUPERFAMILY RNA-binding domain, RBD 30 148 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03850 Arst-Chr4 117253264 117255993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03850 33 126 C2H2 Transcription Factor Family AT2G19380 34.043 1.34e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03850 K12741 - gmx:100807155 245.358