Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03849 ATGGCGTTCCTCAATAGAATGGGAAGCCTACTGAAGCAATCTGCTGTCAGGCACATCAATCAAGAGTTGTCTGGATCAAAACCTTCGATTTTCCAGGCTATTCGATCCATGTCATCTTCAAAGCTTTTCATCGGAGGTATTTCATATAGCACAGATGAGATGAGTCTGCGGGAGGCTTTTGCACGCTATGGAGAAGTAGTTGATGCAAGGGTCATTATGGACCGTGAAACTGGAAGGTCCAGAGGTTTTGGATTCATAACTTTTGCAACAACTGAGGATGCATCTTCTGCCATTCAAGCCATGGATGGCCAGGATCTTCATGGTCGGAGAATACGTGTGAACTATGCTGCAGAAAAATCACGTCCAGGATTCGGCGGTGGTGGCGGCTATGGAGGTGGTGGCTATGGAGGTGGTGGCTATGGCGGTGGTGGTGGCTATGGAGGTGGTGGCTATGGCGGTGGTAATTTCGGTGGTAATGATAATAGTGGTGGAAGTTATGGAGGTGGTGGATATGGTGCCCCAGCAAGCTATGGCAGTGGCAGCACTCAAACTAGTTTCGCAGATAGCGGTGCTAGTAATTTCCAATTCAATGATAACTCTGGCGGAGATCTTCCCTCTGGTGGAGGCAATACGGGTTTGGGATTTGATCATGAGTTTGATGAACAAAAGGACAGAACAGATGGGGAGTTTCAAGACAACAATCTGAGGGAAAACAATGATGAATCCAGTGATATCGCACAGAACCGTGGGTGA 753 0.4768 MAFLNRMGSLLKQSAVRHINQELSGSKPSIFQAIRSMSSSKLFIGGISYSTDEMSLREAFARYGEVVDARVIMDRETGRSRGFGFITFATTEDASSAIQAMDGQDLHGRRIRVNYAAEKSRPGFGGGGGYGGGGYGGGGYGGGGGYGGGGYGGGNFGGNDNSGGSYGGGGYGAPASYGSGSTQTSFADSGASNFQFNDNSGGDLPSGGGNTGLGFDHEFDEQKDRTDGEFQDNNLRENNDESSDIAQNRG 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03849 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Arst4g03849 250 MobiDBLite consensus disorder prediction 176 206 - -
Arst4g03849 250 SUPERFAMILY RNA-binding domain, RBD 30 150 IPR035979 GO:0003676
Arst4g03849 250 MobiDBLite consensus disorder prediction 176 250 - -
Arst4g03849 250 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 188 - -
Arst4g03849 250 SMART rrm1_1 41 114 IPR000504 GO:0003723
Arst4g03849 250 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 140 - -
Arst4g03849 250 Gene3D - 19 154 IPR012677 -
Arst4g03849 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Arst4g03849 250 CDD RRM2_NsCP33_like 41 116 - -
Arst4g03849 250 MobiDBLite consensus disorder prediction 216 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03849 Arst-Chr4 117253264 117256001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03849 31 119 Eukaryotic Initiation Factors Gene Family AT3G16380 39.326 2.20e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03849 K12741 - gmx:100807155 241.121