Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03773 ATGGCAGCCAGCACTACTTTCTCTCTCTGTTTTGCTGCTGCTGCTGCTGCTTCTTCTTCTTCTTGTTGTAATCATAATTCTAATCCTTTAACGCCATTGAATCAGAGGCCGAGGCCTTTGGGAATAGCGAATCGCTTCGTTTCGTCTTCCGTGGCTGCGCCTTTGTCTTCTGTGTGCTTCGGTGCTTCTGCTTCTGTATTCAGCTCCAAAGCTAGGATTTTCACGGCGTTAGCAGCGGTCGTCGATGAAGAGACGGCGGTTGCGGAACGGGAGCGTGGTTTGGCGGAAAATGATGGTTCCGACGAGGAAGAGCAGTGGAAGATGCCGAGAGCGACGGAGGTTTACGTCTGCAACCTTCCAAGGAGCTGTGACACCGAACAGCTACGTCAGATGTTCGAGCCTCACGGAACTATTCTATCCGCTGAGGTTTGCCGGAATGCGGATACTGGTGAGAGTAGAGGATGTGCTTATGTGACATTGTCATCTGTTGCCTCAGCAAGAAATGCAGTCACTGCCTTGGATGGATCGGATGTTGGTGGACGGGAGATGCGGGTTAGATTCTCAGTTGAGATGAATCCCCAGAGGAGGAACCTTGAGACTGCGAATGCTTCACCAAAGAGAGTTGTATACTATGAAGCTCCTCATAAGTTGTACGTTGGGAATCTTGCTAGGGCAGTTAGACCTGAAGAGTTGAGACATCTTTTTAGCAAATTCGGCAATGTGGCTAGTGTAAGATTGTTGAAAGATCAGAAACAAGGGCGAACCCGAGTTTATGCGTTTCTCTCTTTCCTATCGGAGAAAGAACGTGATGCTGCATTGACCCTGAATGGAGCGGAACTTTGTGGTCGGACGTTGGTGGTTAGAGTGGGTATAGACAAGGGTGAAGCTTAA 891 0.4916 MAASTTFSLCFAAAAAASSSSCCNHNSNPLTPLNQRPRPLGIANRFVSSSVAAPLSSVCFGASASVFSSKARIFTALAAVVDEETAVAERERGLAENDGSDEEEQWKMPRATEVYVCNLPRSCDTEQLRQMFEPHGTILSAEVCRNADTGESRGCAYVTLSSVASARNAVTALDGSDVGGREMRVRFSVEMNPQRRNLETANASPKRVVYYEAPHKLYVGNLARAVRPEELRHLFSKFGNVASVRLLKDQKQGRTRVYAFLSFLSEKERDAALTLNGAELCGRTLVVRVGIDKGEA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03773 296 SMART rrm1_1 113 186 IPR000504 GO:0003723
Arst4g03773 296 SMART rrm1_1 216 288 IPR000504 GO:0003723
Arst4g03773 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Arst4g03773 296 SUPERFAMILY RNA-binding domain, RBD 108 197 IPR035979 GO:0003676
Arst4g03773 296 SUPERFAMILY RNA-binding domain, RBD 214 294 IPR035979 GO:0003676
Arst4g03773 296 Gene3D - 78 199 IPR012677 -
Arst4g03773 296 PANTHER OS02G0815200 PROTEIN 20 289 - -
Arst4g03773 296 Gene3D - 200 296 IPR012677 -
Arst4g03773 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Arst4g03773 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Arst4g03773 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03773 Arst-Chr4 116590229 116592172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03773 114 287 Eukaryotic Initiation Factors Gene Family AT1G22760 29.143 3.94e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03773 - - pcin:129288259 278.87