LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g03761	ATGGGTTGTGTTAACTCCAAGAAGGCTCGTGCCGGAGATCCATCTGCTTCGCCGGCCGACGATGGCGTAGCATACGTCAAATCCTATTCGCGGAGAGGCAGACTCGCCTCCGGTCGCGTTGGGGCGGTGGTGTCTTCTTCCCCCGCTTCCAGGGGCCGTTCTTCGACATCCGCGGTGGTTGCCGGTGAGGCTGCGGAGGTCCGGGAAGGAGGTGGTGACGCAAAAGGCGACGAGGCGGTGGCTGCGGAGAAGCTTGAGAAGAAGAGTAGTAAGGATATGGTGGTGAGGGAGAATGGGAATGGGAATAATGGTGGGAGAGGGAGCTCGAGGCAAATTGGGGCATTGAATGCGAGGATTGGTTTGTCGCATAGGTTTGTGGAAGCTGAAAGCATTGCTGCTGGTTGGCCACCGTGGCTCACATCTGTTGCCGGTGAAGCCATTCACGGTATGGTTCCTCTCAAAAGTGATGCTTTTGAGAAATTGGACAAGATTGGACAAGGTACATACAGCAGTGTTTTCCAAGCACGTGAAGTTCATAGTGGGAGGATGGTTGCCCTGAAGAAGGTGCGATTTGACAATTTCCAACCGGAGAGTATTAGGTTCATGGCAAGAGAGATTATAATCCTCCGTGCACTTGACCATCCAAACGTCATGAAATTGGAGGGCATAATCACTTCCCAACTTTCTCACAGCATCTACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTTCTCCGGACATCAAGTTCAGTGAATCACAGATTAAATGTTACATGAGGCAGCTATTAAGTGGCATGGAGCATTGTCACCTTAGAGGTATTATGCATAGAGACATTAAAGTGTCCAATATATTAGTGAACAATGATGGTGTTCTCAAGATTGGAGACTTTGGATTAGCAAATACACTTAGCCCAAACAACAAGAACCCTTTAACAAGTCGTGTGGTGACTCTTTGGTATCGCGCTCCTGAGCTCTTGATGGGTTCAACGAATTATGGAGTTTCAGTGGATCTATGGAGTGTCGGCTGCGTATTCGCAGAACTTTTCCTGGGAAAGCCAATCCTTAAGGGAAGAAATGAGGTTGAACAATTGCACAGAATCTTTAAGCTTTGTGGATCTCCACCAGAAGAGTTCTGGAGAAAGTGTAAGCTTCCTCTTGCAACAATGTTTAAACCGCAGACTACCTACGAAAGCTCTCTTTGGGAGAGGTGTAAAGGTTTTCCTCCAACTGCTGTAAGCCTAATTGAGACTTTACTGTCCATTGATCCTTCCGAGCGTGGCACTGCCTCCTCTGCACTGATGTCTGAGTATTTTAGCACAAAGCCGCATGCTTGCAGTCCATCATTCCTTCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAAATACCGGGATGATGCACAAAGGAAAAAGGCCGGAGTGGCTCGTGAGGCTGCGACGACAGCAAAAAGGCCAAAACGGGTCCAGAAAGTTTTGGATTGCCCCAACAATAATAATAAAACAGCTACAAAAGAGGAAATGCAGAACAATGCTCAAAATGGTGGTAGAGATGATAAAGTATATCAGACAAAGGGAAGAATCGGAGTTGTGCAGCAGAAAGAGATGCAACATAAACCAATGTTTGATGCTAAGTCAGAGGCTGCCAAAACAAATGGTTCTCATGGCTATAGTGTATACTCAGGTCCGGCACCAGCCTCGGGATCTACCGGCTTTACTTGGGCTACTAAGAGGCGAAAAGATGCTGCTTCAACTTTATCAGATGGCTCAAGAAGTAAAATCAGTGGACTTGATCCAAACTTCGCCAAAGGAACATATGATTTAGCAAGACAAGGGATTGATGTTTCACAAAGAAATCGTAGTTACACAAACTTTCAAGATGAAACACATCAAGAATCATTTGATGGAGCTGATGAGTACTTGGATTATGATCCCACAGAAAAAGCAGATTCTATGATAAGTACTCAGGGCAACATTAATGAAGACTTGCATTTTGAGAATGGCATGAGAAGAGGAGCCAGAAAATCACGGTTTGGTTGA	2049	0.4607	MGCVNSKKARAGDPSASPADDGVAYVKSYSRRGRLASGRVGAVVSSSPASRGRSSTSAVVAGEAAEVREGGGDAKGDEAVAAEKLEKKSSKDMVVRENGNGNNGGRGSSRQIGALNARIGLSHRFVEAESIAAGWPPWLTSVAGEAIHGMVPLKSDAFEKLDKIGQGTYSSVFQAREVHSGRMVALKKVRFDNFQPESIRFMAREIIILRALDHPNVMKLEGIITSQLSHSIYLVFEYMEHDLAGLVSSPDIKFSESQIKCYMRQLLSGMEHCHLRGIMHRDIKVSNILVNNDGVLKIGDFGLANTLSPNNKNPLTSRVVTLWYRAPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRNEVEQLHRIFKLCGSPPEEFWRKCKLPLATMFKPQTTYESSLWERCKGFPPTAVSLIETLLSIDPSERGTASSALMSEYFSTKPHACSPSFLPKYPPSKEMDAKYRDDAQRKKAGVAREAATTAKRPKRVQKVLDCPNNNNKTATKEEMQNNAQNGGRDDKVYQTKGRIGVVQQKEMQHKPMFDAKSEAAKTNGSHGYSVYSGPAPASGSTGFTWATKRRKDAASTLSDGSRSKISGLDPNFAKGTYDLARQGIDVSQRNRSYTNFQDETHQESFDGADEYLDYDPTEKADSMISTQGNINEDLHFENGMRRGARKSRFG	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g03761	682	MobiDBLite	consensus disorder prediction	659	682	-	-
	Arst4g03761	682	MobiDBLite	consensus disorder prediction	43	57	-	-
	Arst4g03761	682	Gene3D	Transferase(Phosphotransferase) domain 1	241	482	-	-
	Arst4g03761	682	SUPERFAMILY	Protein kinase-like (PK-like)	153	446	IPR011009	-
	Arst4g03761	682	ProSiteProfiles	Protein kinase domain profile.	158	442	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst4g03761	682	MobiDBLite	consensus disorder prediction	34	78	-	-
	Arst4g03761	682	FunFam	probable serine/threonine-protein kinase At1g54610	145	240	-	-
	Arst4g03761	682	PANTHER	CELL DIVISION PROTEIN KINASE	156	446	-	-
	Arst4g03761	682	CDD	STKc_CDK9_like	158	442	-	-
	Arst4g03761	682	FunFam	probable serine/threonine-protein kinase At1g54610	241	482	-	-
	Arst4g03761	682	MobiDBLite	consensus disorder prediction	1	22	-	-
	Arst4g03761	682	MobiDBLite	consensus disorder prediction	497	521	-	-
	Arst4g03761	682	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	278	290	IPR008271	GO:0004672\|GO:0006468
	Arst4g03761	682	Pfam	Protein kinase domain	158	442	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst4g03761	682	Gene3D	Phosphorylase Kinase; domain 1	148	240	-	-
	Arst4g03761	682	ProSitePatterns	Protein kinases ATP-binding region signature.	164	187	IPR017441	GO:0005524
	Arst4g03761	682	MobiDBLite	consensus disorder prediction	497	523	-	-
	Arst4g03761	682	SMART	serkin_6	158	442	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g03761	Arst-Chr4	116520152	116524770	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst4g03761	156	480	Core Cell Cycle Gene Families	AT5G10270	46.921	2.03e-104	325

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Arst4g03761		Pkinase	7.4e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst4g03761	-		-	lja:Lj1g3v2982400.1	838.18