LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g03754	ATGGCAAGGAAGAGAAAGGTTGCTGAAGCAATTGAAGAAGAAAACATGGAATCATGGCATGAAATGATCAAAGAAGGTGGAGCATTAGGAGAATCTACAAGAAGATCAAGAAAGAGGTTTGTTGGTGTGAGACAAAGGCCATCAGGAAGATGGGTGGCTGAGATCAAAGATACCATTCAGAAGATCAGGGTTTGGTTAGGAACTTTTGATACTGCTGAAGAAGCTGCAAGAGCCTATGATGAAGCAGCTTGGATCCTCCGCGGATCCAATACTCGAACCAACTTCAATCCTTGCTATCCTCGTTCCTCTTCAAATCCTGCTCTTTCCTCAAAGATTGCAAATCTCCTCCTTCAAAGGCTTAAAGCAAAGAATAATATCATCTCTTGTTCTAATCTTAGTACTACTCACCAACAAGATCATCAAGCTGATGTGTATGGAGCAGAGTCGAAAGCTTTCTCGATTGATCAATTCGCAGATTTCCTTTATGATCCTGAAGCTTGTAGCGCAAGCAACAACAAATTTAGTGATAATATTGAACAAATTGCTTGCATCACTAGTAGTTTCGAATCGTGTTTAACAGAGAAAGATGCAAAAAGGGATAAAGAAATGGATGCAACACAAACATCAAGCATTGACTCGAATTCAAGAGTGAAAAATGAGGAAGAAATCGAAGAAGAAGAAGAAGGTTTGATTGTTGAGGATTTCAGGTTCTTGGATGAGAATTCTATTGTTTCATCAAGTTACTGTTATTCTCCTTTTGAGATTGTTGAAGAGATGGAGGAGCCTGTGGAGGCAGAGAACTATGATGGTGATGATGAGCCTTCAATGATGAAAGCTATAATGAACAGAATGAAGTATGAGAGAAAGTTCTCAGCTTCTCTCTATGCCTTCAATGGGATACATGATTATGAGTGCTTGAAGTTGAAGCTTCAGTCAGGGAACATAAAGAGTAGAACAGGAATTTCAGATCAAATTAGCAAACTTAACAAGGCTTGCAGCAAGAACAAAAATGAGGTTAATAAGGAGGAAGATGAAAAGGAAAAGGAGAAGGAATCCATTGATGGAGATTTGTTGTTTTGGAACTCCCTTAATCTCCCTAATATTTTCTAA	1110	0.3874	MARKRKVAEAIEEENMESWHEMIKEGGALGESTRRSRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAAWILRGSNTRTNFNPCYPRSSSNPALSSKIANLLLQRLKAKNNIISCSNLSTTHQQDHQADVYGAESKAFSIDQFADFLYDPEACSASNNKFSDNIEQIACITSSFESCLTEKDAKRDKEMDATQTSSIDSNSRVKNEEEIEEEEEGLIVEDFRFLDENSIVSSSYCYSPFEIVEEMEEPVEAENYDGDDEPSMMKAIMNRMKYERKFSASLYAFNGIHDYECLKLKLQSGNIKSRTGISDQISKLNKACSKNKNEVNKEEDEKEKEKESIDGDLLFWNSLNLPNIF	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g03754	369	MobiDBLite	consensus disorder prediction	197	225	-	-
	Arst4g03754	369	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	25	290	-	-
	Arst4g03754	369	SUPERFAMILY	DNA-binding domain	39	96	IPR016177	GO:0003677
	Arst4g03754	369	Coils	Coil	325	352	-	-
	Arst4g03754	369	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Arst4g03754	369	Pfam	AP2 domain	39	83	IPR001471	GO:0003700\|GO:0006355
	Arst4g03754	369	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Arst4g03754	369	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Arst4g03754	369	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Arst4g03754	369	CDD	AP2	38	95	IPR001471	GO:0003700\|GO:0006355
	Arst4g03754	369	Gene3D	AP2/ERF domain	38	97	IPR036955	GO:0003700\|GO:0006355
	Arst4g03754	369	FunFam	ethylene-responsive transcription factor RAP2-11	38	97	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g03754	Arst-Chr4	116483743	116485021	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst4g03754	31	116	AP2-EREBP Transcription Factor Family	AT5G19790	69.767	3.02e-33	122

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Arst4g03754		AP2	5.6e-14	CL0081