Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03740 ATGGCTCTTCTTGGAATATTTCTTGTGGTGGCATATTTTTCTGTGGTCTCACAACATGTCATTGGATATGGAAATTGGATCAATGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCTGGAACAATGGGGGGTGCTTGTGGATATGGAAACCTGTATAGCAGTGGATATGGGACAAACACAGCAGCACTAAGCACAGCACTATTCAACAATGGATTAACATGTGGAGCATGCTATGAAATAAAGTGTGTGAATGACCCACAATGGTGTCTTCCAGGCTCCATTGTAGTAACTGCCACTAATTTCTGTCCTCCTGGTGGATGGTGTGACCCTCCAAATCACCATTTTGACCTCTCACAACCTATTTTCCAGCACATTGCACAATACAAAGCTGGAATTGTGCCTGTAGTTTATAGAAGGGTAAGGTGCAGGAGAAGGGGTGGAATAAGGTTCACCATCAATGGACACTCATACTTCAATTTGGTGCTAGTGACAAATGTTGGAGGTGCAGGTGATGTGCATGGTGTGGCCATTAAAGGGTCAAGAACAAGATGGCAATCCATGTCAAGGAACTGGGGGCAAAATTGGCAAAGCAACTCATACCTCAATGGCCAAAGTCTTTCTTTTATAGTCACCACAAGTAATGGACACAAGGTCTTGTCTTATAATGTTGCCCCACCTAATTGGTCCTTTGGACAGACCTACACTGGAAGGCAATTCAACTACTAA 729 0.4362 MALLGIFLVVAYFSVVSQHVIGYGNWINAHATFYGGSDASGTMGGACGYGNLYSSGYGTNTAALSTALFNNGLTCGACYEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHGVAIKGSRTRWQSMSRNWGQNWQSNSYLNGQSLSFIVTTSNGHKVLSYNVAPPNWSFGQTYTGRQFNY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03740 242 SUPERFAMILY PHL pollen allergen 145 237 IPR036749 -
Arst4g03740 242 SUPERFAMILY Barwin-like endoglucanases 25 166 IPR036908 -
Arst4g03740 242 SMART dpbb_1 61 138 IPR007112 -
Arst4g03740 242 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Arst4g03740 242 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Arst4g03740 242 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Arst4g03740 242 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Arst4g03740 242 PRINTS Expansin signature 223 239 IPR002963 GO:0009664
Arst4g03740 242 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Arst4g03740 242 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Arst4g03740 242 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Arst4g03740 242 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Arst4g03740 242 Pfam Expansin C-terminal domain 149 226 IPR007117 -
Arst4g03740 242 FunFam Expansin 148 240 - -
Arst4g03740 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Arst4g03740 242 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Arst4g03740 242 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Arst4g03740 242 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Arst4g03740 242 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Arst4g03740 242 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Arst4g03740 242 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Arst4g03740 242 PANTHER EXPANSIN-A15 7 240 IPR002963 GO:0009664
Arst4g03740 242 FunFam Expansin 15 144 - -
Arst4g03740 242 Gene3D - 148 240 IPR036749 -
Arst4g03740 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Arst4g03740 242 Pfam Lytic transglycolase 61 138 IPR009009 -
Arst4g03740 242 Gene3D - 12 144 IPR036908 -
Arst4g03740 242 CDD DPBB_EXPA_N 26 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03740 Arst-Chr4 116334269 116336526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03740 1 240 Expansin Gene Family AT2G03090 76.613 5.09e-137 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03740 K20628 - qsa:O6P43_004469 439.499