Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03657 ATGGCAGAAAGTACAAGGAAACTTGCCCTTATTTTCTTGGTTACTTTTGCCATTGTTATTCCATGCATTAAGGCTGGCATTGCTGAATATGATGATTTTCTCAAGGCACAAGCTGAGATGGCCCATGAAATTGCTCTTGAGTCCTTCGTTCCTAATCCCTTGAATGTTACATCTGAGCTCAATCTCCACGTTCATCTGGCAATGGAGGAAGCAGCAAACATGACAAGGAGGAATCTAAGGCAAGGACATGCATTCGATCCACATGCACCATGCGAGGCCACTAACCCTATTGACCGTTGCTGGAGGTGCCGTGCCGATTGGGCCAAAAACCGCCAATTGTTGGCCAAATGTGGAAAGGGTTTCGGACGTAGGGCCGTCGGAGGCCTCGGTGGCCCCATCTACGTCGTCACCGACGAATCCGATAACGATTTGGTTAACCCTGCTCCCGGAACCCTAAGACATGCGGTTACTCAGAAGGGACCCTTGTGGATCATCTTTGCACGCAGCATGGTCATTAGATTGCAACAAGAGTTGTTGATTTCCTCCGACAAGACCATCGACGGCCGCGGTGCTCATGTTATGATCAGGGACGGCGCTGGCCTCACTATGCAATTCGTCAACAATATCATTGTCCATAACCTCCACATCAAGAAGATCAAGTCCATGGCTGGTGGCATGATTAGGGATTCTTACAACCATGTTGGTCAAAGAACAAGGAGTGATGGTGATGCCATCTCCATTTTCGGATCCTCCAACATTTGGGTTGATCACATTTCCATGTCTGAGTGTGATGATGGTCTTGTTGACGTTATCCAGGGCTCTACCGCCATCACCATCTCCAATTGCCACATGACCAAGCATAACGACGTGATGTTGTTCGGAGCTAGTGACTCGTACACCGGCGACAAGATCATGCAAATCACGGTAGCATTCAACCACTTCGGACAAGGATTGATTCAGAGGATGCCAAGGTGCAGATATGGATTCTTCCATGTGTTGAACAATGACTACACTCATTGGTTGATGTATGCCATTGGAGGAAGCTCAGGGCCAACAATTCTGAGCCAAGGAAACCGTTTCATTGCACCAAACAACAATGCTGCCAAGGAAATCACACACAGAGACTATGCACCAAAAGAGGTGTGGTCAAAGTGGCAATGGACCTCAGATCACGACCTCTTCATGAATGGTGCCACGTTTCTTCAATCTGGTCAACCAATCACTAAGCTGCAAAATGTCAACAAAGGGATGATAATGAAGCCAAGACCTGGTAGCCATGCCAATAGGCTAACAAAGTATGCTGGTGCCCTTGGTTGTATTGTAGGCAAGCCTTGCTAG 1338 0.4776 MAESTRKLALIFLVTFAIVIPCIKAGIAEYDDFLKAQAEMAHEIALESFVPNPLNVTSELNLHVHLAMEEAANMTRRNLRQGHAFDPHAPCEATNPIDRCWRCRADWAKNRQLLAKCGKGFGRRAVGGLGGPIYVVTDESDNDLVNPAPGTLRHAVTQKGPLWIIFARSMVIRLQQELLISSDKTIDGRGAHVMIRDGAGLTMQFVNNIIVHNLHIKKIKSMAGGMIRDSYNHVGQRTRSDGDAISIFGSSNIWVDHISMSECDDGLVDVIQGSTAITISNCHMTKHNDVMLFGASDSYTGDKIMQITVAFNHFGQGLIQRMPRCRYGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNNAAKEITHRDYAPKEVWSKWQWTSDHDLFMNGATFLQSGQPITKLQNVNKGMIMKPRPGSHANRLTKYAGALGCIVGKPC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03657 445 Gene3D - 94 438 IPR012334 -
Arst4g03657 445 SUPERFAMILY Pectin lyase-like 95 436 IPR011050 -
Arst4g03657 445 SMART amb_all 169 366 IPR002022 -
Arst4g03657 445 PANTHER PECTATE LYASE 18-RELATED 42 443 IPR045032 GO:0030570
Arst4g03657 445 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570
Arst4g03657 445 Pfam Pectate lyase 178 360 IPR002022 -
Arst4g03657 445 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Arst4g03657 445 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Arst4g03657 445 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Arst4g03657 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Arst4g03657 445 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Arst4g03657 445 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Arst4g03657 445 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Arst4g03657 445 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03657 Arst-Chr4 115361908 115363626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03657 10 445 Polysaccharide Lyase AT1G14420 56.444 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03657 K01728 - gmx:100780236 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g03657 4 115361908 115363626 Arst4g03657 4 115361908 115363626 ECH
Arst4g03657 4 115361908 115363626 Arst3g05077 3 126151550 126152966 ECH